Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k18
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    38   0.001
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    31   0.20 
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    28   1.4  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.3  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   5.8  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   5.8  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +1

Query: 517 DKEIRNEVDTFIAAGSHTSSQLMTVVVMVLGSYPEIQDKVYQEIKSVCGDS 669
           + EI   +   + AG HTS+  +  V+ +LGS PEI + +++E K V G++
Sbjct: 275 EHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGEN 325


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 511 FTDKEIRNEVDTFIAAGSHTSSQLMTVVVMVLGSYPEIQDKVYQE-IKSVCGDSD 672
           F+D+EI     +F+ A    +S  MT +  +L  +P++  KV +E ++   GD D
Sbjct: 304 FSDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDID 358


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
 Frame = +1

Query: 172 MNEFPNTATAFGIEEEECDF--NQKYMHAVDELMAVLTRRLQNILLHNSFIYKLSALKKK 345
           + +  N+  +F  +E E     NQ Y   + E     T  +QN+L  NS   KL A  +K
Sbjct: 336 LEDSKNSVLSFLKDENELFMKQNQLYRTILYETRNKKTL-VQNLL--NSLEGKLQAHLEK 392

Query: 346 EDELIETIMAMSNKAINSKRRALKNKQESHENGCASEKKTQ 468
            ++   T   +S K  N + ++L+ K    +N C SEKKT+
Sbjct: 393 FEQ---TERDISEK--NEEVKSLREKAAKVKNDCTSEKKTR 428


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 635  TLSWISGYEPNTITTTVMSCDDV*DPAAIKVSTSFLISLSVKASSSKPFKRRSDS 471
            ++S  S   PN +++TV+S D     +    STS + + S+ ++S K +   + S
Sbjct: 3814 SISEASTSNPNILSSTVLSFDSTITNSFTTASTSIMKTTSLNSNSYKWYNSTTQS 3868


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 307 NSFIYKLSALKKKE-DELIETIMAMSNKAINSKRRALKNKQES 432
           NSF+Y +SA KKKE     + +  +S+  + S     K+K+++
Sbjct: 713 NSFLYHVSATKKKEFTRQYQLLKNISSNKLGSISGITKHKKKA 755


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 316  IYKLSALKKKEDELIETIMAMSNKAINSKRRALK 417
            + KL+A   K+D  IE  +  S ++   +RRA+K
Sbjct: 1882 LQKLNAKNSKDDLCIEQYLMKSERSFFHERRAIK 1915


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,162
Number of Sequences: 5004
Number of extensions: 56033
Number of successful extensions: 151
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)