Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k16
         (406 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0050 + 853712-855368,855440-856113                               27   4.3  
01_01_0680 + 5217633-5219072                                           27   4.3  
04_04_0915 - 29385926-29385952,29386069-29386285,29386367-293866...    27   5.6  
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43...    26   9.9  

>09_01_0050 + 853712-855368,855440-856113
          Length = 776

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 258 LLANRLTTSANSLPIISTIDLFPNHISIALLDSHFEGL*SLGG 130
           L A  L  +A S PI + + L PN  +++L ++ F G   +GG
Sbjct: 151 LRALNLAGNALSGPIPANLTLLPNLTAVSLANNFFSGALPVGG 193


>01_01_0680 + 5217633-5219072
          Length = 479

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 261 RLLANRLTTSANSLPIISTIDLFPNHISIA 172
           RL+ N  + +   +PI  T+  FPNH SIA
Sbjct: 115 RLIGNGTSAATGLVPIFPTLT-FPNHYSIA 143


>04_04_0915 -
           29385926-29385952,29386069-29386285,29386367-29386622,
           29386745-29387072,29387157-29387587,29388014-29388163,
           29388212-29388398,29388709-29388750,29389007-29389555,
           29389778-29390032
          Length = 813

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +2

Query: 152 SKWLSNSAMDMWFGNKSIVEIIGREFADVVNRFASRRARDVLIQKYSNQESTIN 313
           SK+    A+ + F  K + E +    + +  RFA+R A D+ ++KY    S +N
Sbjct: 267 SKFQLPIALTVAFATKEVDEAMSSS-SQLSQRFAARSAVDLNLEKYMLNNSQLN 319


>06_01_0047 -
           429838-429960,430413-430508,430589-430596,431088-431141,
           431226-431274,431368-431466,431560-431639,431926-431989,
           432082-432255,432342-432965,433046-433189,433262-433372,
           433442-433498,433664-433798
          Length = 605

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 247 SIDDVSKFSTNNFND*FISEPHIH 176
           S D ++  STN+ ND  +S+PH++
Sbjct: 51  SQDHLNVISTNDLNDMDVSQPHVN 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,353,251
Number of Sequences: 37544
Number of extensions: 168946
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)