Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k16
         (406 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1262|AAF46436.1|  117|Drosophila melanogaster CG15366-P...    31   0.77 
AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-P...    27   7.2  
AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-P...    27   7.2  
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran...    27   9.5  

>AE014298-1262|AAF46436.1|  117|Drosophila melanogaster CG15366-PA
           protein.
          Length = 117

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 258 LLANRLTTSANSLPIISTIDLFPNHISIALLDSHFEGL*SLGG 130
           ++A   T  A++L  +  +D+F  H+S  ++D   + L S+GG
Sbjct: 23  VIATGKTLKASNLATVYEVDMFSGHVSGTVVDKRLDILFSIGG 65


>AE014134-1672|AAF52796.1| 4345|Drosophila melanogaster CG15828-PA,
            isoform A protein.
          Length = 4345

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 189  SEINQSLKLLVENLLTSSIDLPAGEPEMFSYKN 287
            SE+   LK+   NL++ S DLP  + E+FS ++
Sbjct: 988  SELVAKLKVRGRNLVSFSFDLPRDKNEIFSVRS 1020


>AE014134-1671|AAS64667.1| 4374|Drosophila melanogaster CG15828-PB,
            isoform B protein.
          Length = 4374

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 189  SEINQSLKLLVENLLTSSIDLPAGEPEMFSYKN 287
            SE+   LK+   NL++ S DLP  + E+FS ++
Sbjct: 1017 SELVAKLKVRGRNLVSFSFDLPRDKNEIFSVRS 1049


>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
           transcriptase-like polymeraseprotein.
          Length = 1059

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 107 KVKIETSHPPRDYRPSKWLSNSAMDMW 187
           KVKI T H P  +  S W  N+ +  W
Sbjct: 570 KVKIFTDHQPLTHSLSSWNGNARIKRW 596


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,213,771
Number of Sequences: 53049
Number of extensions: 299074
Number of successful extensions: 726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1191504915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)