Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5k15
(660 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0053 - 10286076-10286516,10286560-10287586,10287756-102880... 34 0.12
07_02_0028 + 11964941-11964991,11965259-11966101,11966249-119665... 33 0.27
04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871 32 0.35
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634... 31 1.1
04_03_0057 + 10407402-10407452,10407540-10407782,10408506-104089... 31 1.1
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587... 27 2.4
10_07_0028 + 12019827-12020000,12020083-12020505,12020583-120206... 29 3.3
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 28 7.6
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 28 7.6
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 28 7.6
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 28 7.6
>04_03_0053 -
10286076-10286516,10286560-10287586,10287756-10288096,
10288198-10288248
Length = 619
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 409 PLGSKECAEVSYFRNQNS*CWWWEWDREL 495
PLGS E E++ FRN++ WW EW + +
Sbjct: 414 PLGSIENIELAKFRNKSFDTWWGEWKQHI 442
>07_02_0028 +
11964941-11964991,11965259-11966101,11966249-11966560,
11966640-11967073,11967500-11967941
Length = 693
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 409 PLGSKECAEVSYFRNQNS*CWWWEW 483
PLGS E E++ FR++N WW EW
Sbjct: 355 PLGSIENIELAMFRSKNFDRWWGEW 379
>04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871
Length = 398
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 409 PLGSKECAEVSYFRNQNS*CWWWEW 483
PLGS E E++ FR++N WW EW
Sbjct: 374 PLGSIENIELARFRSKNFDRWWGEW 398
>05_05_0084 -
22262007-22262300,22262435-22262707,22263418-22263468,
22263944-22264035,22264715-22264724
Length = 239
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 249 RYRRLCQGKGLHVACQFPNAGPGS 320
+ R+LCQ KG+H++ P PGS
Sbjct: 129 KLRKLCQSKGVHLSAYAPLGSPGS 152
>04_03_0057 +
10407402-10407452,10407540-10407782,10408506-10408976,
10409058-10409483,10409559-10409618,10409694-10409807,
10409888-10409956
Length = 477
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 409 PLGSKECAEVSYFRNQNS*CWWWEWDREL 495
PLGS E E++ R++N WW EW++ +
Sbjct: 208 PLGSIESIELARPRSRNLDKWWGEWNQHI 236
>08_02_1446 +
27156449-27156790,27157961-27158042,27158698-27158792,
27159421-27159492,27159572-27159651,27159728-27159827,
27160064-27160141,27160408-27160455,27160570-27160638,
27161035-27161175,27161262-27161516
Length = 453
Score = 26.6 bits (56), Expect(2) = 2.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 482 HSHHQHHEFW 453
H HHQHH+ W
Sbjct: 73 HHHHQHHQHW 82
Score = 21.4 bits (43), Expect(2) = 2.4
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -2
Query: 527 H*SDRRCARNANSRSHSHHQHH 462
H + RR R ++ HHQ H
Sbjct: 48 HANPRRQHRGGGGGAYHHHQQH 69
>10_07_0028 +
12019827-12020000,12020083-12020505,12020583-12020642,
12020709-12020822,12020903-12020908
Length = 258
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 412 LGSKECAEVSYFRNQNS*CWWWEWDREL 495
LGS E E++ FR++N WW +W + +
Sbjct: 12 LGSIENIELAKFRSKNFDRWWGDWKQHI 39
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 359 ITALRYTFYKQTTSPYCLWGRKSARRYLTSETRTHDVG 472
+ LR YK T S WGRK A + S+ + H VG
Sbjct: 168 LRCLRQVAYKDTRSVITGWGRKLAALHALSQ-KAHHVG 204
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 359 ITALRYTFYKQTTSPYCLWGRKSARRYLTSETRTHDVG 472
+ LR YK T S WGRK A + S+ + H VG
Sbjct: 168 LRCLRQVAYKDTRSVITGWGRKLAALHALSQ-KAHHVG 204
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 359 ITALRYTFYKQTTSPYCLWGRKSARRYLTSETRTHDVG 472
+ LR YK T S WGRK A + S+ + H VG
Sbjct: 331 LRCLRQVAYKDTRSVITGWGRKLAALHALSQ-KAHHVG 367
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 359 ITALRYTFYKQTTSPYCLWGRKSARRYLTSETRTHDVG 472
+ LR YK T S WGRK A + S+ + H VG
Sbjct: 331 LRCLRQVAYKDTRSVITGWGRKLAALHALSQ-KAHHVG 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,137,730
Number of Sequences: 37544
Number of extensions: 393886
Number of successful extensions: 1084
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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