Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k14
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    28   0.50 
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb...    24   6.2  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    24   8.2  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    24   8.2  

>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 27.9 bits (59), Expect = 0.50
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 153 NDLLYKWLSVGIDALSSLQGGPLWSPKHKASG 58
           ND+  K+LSVG   L+++ G  L++    A+G
Sbjct: 188 NDITSKYLSVGTITLTTISGSDLYTSTFPANG 219


>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 350 VETVIFILKSVVDFHTEISHLCLVNKVQNHLFFASATLAPSCRLF 216
           VET +F +K       E  ++C V  + ++L   + T   +CR+F
Sbjct: 56  VETQVFYIKP-----NEGDYMCFVQLIHSNLGSWTTTAQSTCRIF 95


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 206 STLKTIYTTERESPKQRTNDFEL 274
           STL  I T++RE  + RT++F+L
Sbjct: 72  STLYVIPTSKREYGRIRTSEFDL 94


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = -1

Query: 183 WTPNLQHRLHNDLLYKWLSV 124
           W P ++H  HN+    W+ +
Sbjct: 348 WLPCIKHNQHNEKWISWIRI 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,426
Number of Sequences: 5004
Number of extensions: 24866
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)