Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k14
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1069 + 23743031-23744062                                         28   2.5  
11_04_0109 - 13532432-13532988,13533267-13533450                       27   4.4  
08_01_0572 + 5090474-5090787,5090973-5091000,5092725-5092837,509...    27   4.4  
02_04_0566 - 23912651-23913862                                         27   4.4  

>07_03_1069 + 23743031-23744062
          Length = 343

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = -3

Query: 142 LQMAECRN*CSFQPARWTAVEPQAQGKRKRQGAKPVVVASL 20
           LQ   CR     +P+    V P A  KRKR  A PV VA L
Sbjct: 56  LQSRPCRARKRGRPSVVPPVSPPAGAKRKRAPAYPVPVAPL 96


>11_04_0109 - 13532432-13532988,13533267-13533450
          Length = 246

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 81  STAVHLAGWKEHQFRHSAICRGG 149
           ST +H+A WK H    + +CR G
Sbjct: 73  STLLHIAAWKGHSDLIAQLCRWG 95


>08_01_0572 +
           5090474-5090787,5090973-5091000,5092725-5092837,
           5092947-5093058
          Length = 188

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 39  GFAPCRFRLPCAWGSTAVHLAG-WKEHQFRHSAICRGGRCGV 161
           G   C  +  C  G   V+LAG WK H  R S     GRC +
Sbjct: 68  GEGKCSRKRGCC-GKPKVYLAGRWKRHLGRRSLTSPVGRCHI 108


>02_04_0566 - 23912651-23913862
          Length = 403

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 99  AGWKEHQFRHSAICRGGRCGVCAAS*ESISW 191
           AG  ++ F    +C  G   VCA   E ISW
Sbjct: 340 AGGGKYNFEMERMCGAGGTAVCARPEERISW 370


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,673,096
Number of Sequences: 37544
Number of extensions: 182430
Number of successful extensions: 458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)