Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k14
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   4.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    20   7.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   7.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    20   7.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   7.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = -1

Query: 198 LPSS*WTPNLQHRLHNDLLYKWLSVGIDALSSLQGGPLWSPKHK 67
           LPS+     L H LH +LL   +    D         L   +HK
Sbjct: 348 LPSAILAMRLSHPLHGNLLPPGVCYTCDVCGKTLSTKLTLKRHK 391


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +3

Query: 84  TAVHLAGWKEHQFRHSAIC 140
           T +   GW  H  RH+  C
Sbjct: 362 TQLREEGWIHHLARHAVAC 380


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 359 FFFVETVIFILKSVVDFHTEISH 291
           FFF  T + ++  V  F   ++H
Sbjct: 150 FFFAATSLLVVAEVCYFTAHVTH 172


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 197 KRGSTLKTIYTTERESPKQRTNDFE 271
           K G+  K  Y T   S + RT+DF+
Sbjct: 202 KSGNESKK-YATSSNSLRNRTHDFQ 225


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 172 VRSPSAGRQARVNTQNNLH 228
           V SP + R  R+   N LH
Sbjct: 391 VSSPDSARHQRIGGCNGLH 409


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 197 KRGSTLKTIYTTERESPKQRTNDFE 271
           K G+  K  Y T   S + RT+DF+
Sbjct: 202 KSGNESKK-YATSSNSLRSRTHDFQ 225


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 95  VDRCGAPSTRQAETARSKTSCSRIV 21
           VD CG  ST   E      +C R V
Sbjct: 302 VDDCGCNSTMLNENPARVMACMRSV 326


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -2

Query: 95  VDRCGAPSTRQAETARSKTSCSRIV 21
           VD CG  ST   E      +C R V
Sbjct: 302 VDDCGCNSTMLNENPARVMACMRSV 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,618
Number of Sequences: 438
Number of extensions: 1394
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)