Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k12
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.7  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 424 FLGYSTNGFSPIEFLLF 374
           +LGYS + F+PI + +F
Sbjct: 312 WLGYSNSAFNPIIYSIF 328


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 75  SFTCYEIQFMFKYXNSYY 128
           +FTC E+ F+ K    YY
Sbjct: 230 NFTCLEVVFVLKRRLGYY 247


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 52  NRNACIFFHLLAMKYSSCLNTXTV 123
           N +  ++FH LA +  S +NT  +
Sbjct: 258 NNDRILYFHSLASRVESWVNTSVI 281


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 592 LGILIIWGLYSTDG 633
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 592 LGILIIWGLYSTDG 633
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,018
Number of Sequences: 438
Number of extensions: 3346
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)