Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5k11
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 4.7
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 26 6.2
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 26 6.2
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 6.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 6.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.2
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 8.2
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 8.2
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = -1
Query: 688 TSPPETVMFHTGTQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLDSLTSQNVLVAFLVI 509
TS P + + S+ S S+S ++ S +S +T L S T +
Sbjct: 584 TSSPSSTSLSISSSSTSSTFSSASTSSPSSISSS---ISSSSTILSSPTPSTSSLMISSS 640
Query: 508 SVLSGSRAPSITSRSRRPIAGSL 440
S++SGS + +S S PI+ SL
Sbjct: 641 SIISGSSSILSSSISTIPISSSL 663
>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 361 LYFQVIIHDRKPRNGTYCKESIVKLLGENLQLADENVTLCL 483
LYF I H + R +C E +K+ + +A V LC+
Sbjct: 7 LYFDAIRHANQRR---WCHECTIKIFRRSFDIARHTVHLCV 44
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 691 RTSPPETVMFHTGTQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLD 551
+ +P E+V+ + SSPDL + S G + PNT D
Sbjct: 486 KLNPSESVVVASEKASSPDLSPKLLPSESQIFDEGIAVTQTPNTLED 532
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 655 GTQSSPDLGSRESSSHRL-AVVSGTRIVSKPNTSLDSLTSQNVLVAFLVISVLSGSRAPS 479
G+ S + +S + +L + ++ +V KPN D + L +VL + P
Sbjct: 94 GSNSPTANEALDSDAKKLRSALTSAILVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQ 153
Query: 478 ITSRSRRPIAGSL 440
+ S R+P +G L
Sbjct: 154 LFSHGRKPWSGIL 166
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -1
Query: 619 SSSHRLAVVSGTRIVSKPNTSLDSLTSQNVLVAFLVISVLSGSRAPSITSRSRRPIAGSL 440
S S + RI + NTS++ +TS+ + V + ++ +SGS + T + +G++
Sbjct: 167 SGSSNITTPYSNRITNS-NTSVNDITSKYLSVGTITLTTISGSDLYTSTFPANGTTSGTV 225
Query: 439 RGV 431
V
Sbjct: 226 EVV 228
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -1
Query: 652 TQSSPDLGSRESSSHRLAVVSGTRIVSKPNTSLDSLTS 539
T +S S E+S+H + + T IV P+TS +S T+
Sbjct: 45 TTTSFSSASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.2
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 496 QRVQRLPEKLQVHFETLENLKKYSASKLFECQKQQQVGGNCSHESQDLER 645
Q R P+ E +NL+ S E Q+ Q + HESQ +R
Sbjct: 1423 QSRDRTPQSRSFTNENNDNLRSVSRHTRREPQQAQNLNARREHESQKSDR 1472
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 451 QLADENVTLCLALGYQRVQRLPEKLQV 531
Q D N T L Y++V+RLP++LQ+
Sbjct: 515 QSFDGNTTYA-QLSYKQVERLPQELQI 540
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 442 ENLQLADENVTLCLALGYQRVQRLPEKLQVHFETLENLKKYSASKLFECQKQ 597
ENL+ D + L L + V LPE +Q L L+K + + QK+
Sbjct: 48 ENLEAIDGKLGSLLHLTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKE 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,511
Number of Sequences: 5004
Number of extensions: 60175
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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