Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k08
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   5.1  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.7  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     26   6.7  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.9  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    25   8.9  

>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 64  CIYSIINKKIYFYDH 20
           C+ +I+N+K+Y YDH
Sbjct: 171 CLNNIMNEKLYAYDH 185


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 463 RVEKELKVKESRRSFKVIEVEKE 531
           R+EK+L +  SR + K + VEKE
Sbjct: 215 RIEKKLTIDSSRSAKKKLSVEKE 237


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 29  KIYFFINYTINTIDSLAVEEVHII 100
           ++Y    Y +N IDS+++EE+ +I
Sbjct: 237 RVYIPALYVLNKIDSISIEELDLI 260


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 680 LYFNNLKRLLNLFTLITLNAFSTSLITLK 594
           L F+N K+LLNL   + +  F  SL  ++
Sbjct: 635 LLFSNFKQLLNLMLFLVIVLFIASLCAVR 663


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 26  IKIYFFINYTINTIDSLAVEEVHII*YKHIYSRFLKSF*VSFIV 157
           I+ Y  +  ++ +I SL +  +H+   +H    F  S+  SF+V
Sbjct: 313 IEAYMSVTSSLPSIQSLVLRLIHLGSIEHAIKCFQSSYNASFLV 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,956,014
Number of Sequences: 5004
Number of extensions: 30908
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)