Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k03
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1112 + 8808544-8808695,8808818-8808961,8809302-8809380,880...    34   0.11 
11_04_0234 + 15187065-15188241,15188316-15188494                       31   1.3  
03_03_0072 + 14266286-14266552,14266860-14266964,14267063-142671...    30   2.3  
04_01_0267 + 3584117-3584922,3585331-3585361                           29   3.1  
08_01_0053 + 365188-365376,365451-365729,365818-367341                 29   4.1  
09_04_0569 + 18600750-18602117                                         29   5.4  
02_05_0978 - 33242938-33242988,33243729-33243911,33244458-332445...    29   5.4  
07_03_0943 - 22778877-22780970,22781376-22781480,22781481-227820...    28   7.1  

>01_01_1112 +
           8808544-8808695,8808818-8808961,8809302-8809380,
           8809477-8809555,8810338-8810377,8810455-8810589,
           8810901-8811038,8811596-8811881
          Length = 350

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 372 CVSPTAQVQTHPRFHKLLVFQSKQARTCVYFLFLVYL--KVSRLPNLRSLDD 223
           C SP  + +         +F +  +R C +F FL++L    S L NLRSL D
Sbjct: 57  CTSPAKKTELEMLGMDASIFDATSSRCCFFFFFLLFLFFVPSSLTNLRSLQD 108


>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 680 PLGQSVRYLCEYIYYTSLSVDNSRTLVCP 766
           PLG     L  ++YY+SLS+D +R  V P
Sbjct: 55  PLGSIDTSLYSHLYYSSLSIDETRCAVAP 83


>03_03_0072 +
           14266286-14266552,14266860-14266964,14267063-14267110,
           14267851-14268099
          Length = 222

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 647 KSTQQQNDTTDPLGQSVRYLCEYIYYTSLSVDNSR 751
           KS QQ      P   + R++C Y+YY SL     R
Sbjct: 150 KSLQQMGFDVAPSDDAGRFVCNYVYYQSLRFAEQR 184


>04_01_0267 + 3584117-3584922,3585331-3585361
          Length = 278

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 674 LCHSAVVYS*FPNSTRSSTASIFGAHSPGGVFRACIIEFLTYSFNIKLSMDPDCSVCCTD 495
           +C  AVV     ++TR + AS         + R    E       I+LS+ P C++CCT 
Sbjct: 215 ICKYAVVDDSSYDNTRDTRAS------DAAILRGITDEQKYAVTEIELSLSPSCTICCTP 268

Query: 494 MIS 486
            +S
Sbjct: 269 RLS 271


>08_01_0053 + 365188-365376,365451-365729,365818-367341
          Length = 663

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 537 NVERICKEFNDASPEDSTRAVSSKDAGSATAGAVWKSRVHNSRMTQQILW-VKASDICVS 713
           +VE + KE + A   +  +    KD   AT     +   H S  T+ +LW +  SD CV+
Sbjct: 467 SVEIVAKEQDSAIESEQLKDCEPKDGTKATDVTEVEVNEHTS-CTESVLWKMDRSDECVT 525

Query: 714 T 716
           T
Sbjct: 526 T 526


>09_04_0569 + 18600750-18602117
          Length = 455

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 27/99 (27%), Positives = 44/99 (44%)
 Frame = +3

Query: 468 YFDKCPANHVCTADGAVRIHTKLNVERICKEFNDASPEDSTRAVSSKDAGSATAGAVWKS 647
           Y D  P N +  ADG V + T  ++ R+       SP  ST   SS  + SAT+    + 
Sbjct: 151 YRDLKPENVLLRADGHVTL-TDFDLSRLLPP---VSPSASTSTSSS--SCSATSSPPPQL 204

Query: 648 RVHNSRMTQQILWVKASDICVSTSTTHRCPWIIAVHWFV 764
           + H     ++I     S +  +TST+    +   + WF+
Sbjct: 205 QGHGRSQLRRIFARSESSVAATTSTSSPGQYTHNLAWFL 243


>02_05_0978 -
           33242938-33242988,33243729-33243911,33244458-33244520,
           33244656-33246083
          Length = 574

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 551 YSFNIKLSMDPDCSVCCTDMISRTFVKIIQTLIAFLM 441
           Y FN+KL +DPD   C  + + +  V + Q +I  L+
Sbjct: 307 YFFNLKLQIDPDAFACAIEKLPQ-LVSLHQNIILKLV 342


>07_03_0943 -
           22778877-22780970,22781376-22781480,22781481-22782059,
           22782149-22782187,22782340-22782372
          Length = 949

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 255 KLLDKQEIENKHRCELVLIEIPVTYEN-VDEFVPAL-WETHTPKLMIHVGVSSIANELTL 428
           K++ K++ ++KH  +L + ++P  YE+ V   VP+    THT    IH   ++  ++   
Sbjct: 713 KMVLKEKSQDKHVIDLNIPQVPSDYESAVSYIVPSSDKNTHTMDRSIHSSETNRMDDCLP 772

Query: 429 EVQAHKKG 452
           ++ A   G
Sbjct: 773 DINASCNG 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,484,106
Number of Sequences: 37544
Number of extensions: 392889
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)