Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5k02
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716...    31   0.75 
07_03_1697 - 28795521-28797328,28797430-28797550                       30   1.7  
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008...    30   2.3  
03_05_0821 - 27960414-27961253                                         29   4.0  
01_05_0135 + 18460416-18460482,18460614-18460942                       29   5.3  
11_06_0154 + 20707811-20708210,20709252-20709523                       28   7.0  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    28   7.0  

>01_05_0420 +
           21969797-21970939,21971307-21971369,21971488-21971616,
           21972241-21972291,21972669-21972809,21972922-21973122,
           21973201-21973419,21973582-21973700,21973772-21973862,
           21975864-21975965,21976291-21976315,21976522-21976592
          Length = 784

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +2

Query: 584 HRY-HSEDEQGNLCYHYERKKPLSTHNACAPPHSSCQLCASXPECQYVNYIHAQPLHS 754
           H Y H + +QGNLC       PL+    C   H +   C    +C Y + +   P H+
Sbjct: 436 HFYLHGKCQQGNLCKFSHDTTPLTKSKPCT--HYARGSCLKGDDCPYDHELSKYPCHN 491


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 620 CYHYERKKPLSTHNACAPPHSSCQLCAS 703
           C H  R  P S H+ C PPH   Q C S
Sbjct: 355 CCHDARHGP-SCHHGCCPPHHGKQACTS 381


>06_03_1075 +
           27399279-27399376,27399449-27399555,27400791-27400898,
           27401763-27401860,27401983-27402033,27402137-27402228,
           27402360-27402459,27402765-27402884,27402977-27403045,
           27403299-27403345,27403428-27403483,27404760-27404800,
           27405155-27405260,27406728-27406860,27406937-27407357
          Length = 548

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
 Frame = -1

Query: 683 KSEEVRKHCESTEVSFFRNDNKGYPVHP-----QNGNDEPRR--------RDQLDKKFLR 543
           K E+  ++C+  E S  R+D++GY  H      ++G+D+ RR        RD+ D +   
Sbjct: 475 KHEDYNRYCKPGERSSSRHDDRGYSKHESRSKYRDGDDDYRRQSGGSRYGRDKCDGERRY 534

Query: 542 RAYDAHG 522
           R  D HG
Sbjct: 535 RGDDDHG 541


>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 132 FLLHLRIQPDVRNHPRATRACHTAHN 209
           FLLH R+ P    HPRA RA    H+
Sbjct: 50  FLLHRRVVPLPSPHPRALRAVSALHS 75


>01_05_0135 + 18460416-18460482,18460614-18460942
          Length = 131

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 90  IAILKTAVRSL*PRFLLHLRIQPDVRNHPRATRACHTAHNLWFTVVT 230
           I+  KT      PR LLHL + P  RN    TR C    +L    ++
Sbjct: 63  ISAAKTGRTPTAPRTLLHLPLPPSHRNRCAITRICQEICHLCLETIS 109


>11_06_0154 + 20707811-20708210,20709252-20709523
          Length = 223

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -2

Query: 721 VLTFWT*GAELTRRVRRCASIVSRQRFLSFVMITKVTLFILRMVTMNLVVGISSI 557
           V  FW      TRR R+ AS  +RQ  ++   +  +  F+L+   +N  VG  ++
Sbjct: 117 VFVFWKSATMTTRRDRQEASASNRQFLITPFRLLCIHSFVLQPSELNFEVGYINV 171


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 156 VGYEDVTRTGATANGPQSSG*QYCIFINFYPVLKFVI 46
           V  EDV R  A  N     G + C+F+  Y   KF I
Sbjct: 448 VNTEDVIRARANRNNNDDPGNRLCVFVRDYYCYKFQI 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,623,529
Number of Sequences: 37544
Number of extensions: 376614
Number of successful extensions: 1022
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)