Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j23
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...   140   2e-34
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    26   4.3  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    26   5.7  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   5.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.7  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   5.7  
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   7.5  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   7.5  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    25   7.5  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   9.9  

>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score =  140 bits (338), Expect = 2e-34
 Identities = 88/210 (41%), Positives = 121/210 (57%), Gaps = 24/210 (11%)
 Frame = +2

Query: 83  TIKEGQAEICLTT-EKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQK------ 241
           ++ EG A I  +   +VFYNPVQ+FNRDLS+  +  + E    + +A+   + +      
Sbjct: 31  SLTEGSAIIPFSNPNEVFYNPVQQFNRDLSVTAIRAWSETRSKKIVAKSHHRHQLLDQNS 90

Query: 242 --------KLETVQDEESGGNPEPK---------ITILEALSATGLRSIRYAKEIPYATN 370
                   K +T  D E   + +            TILEALSATGLRSIRYAKE+P    
Sbjct: 91  ELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELPNVKR 150

Query: 371 IIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPS 550
           I+ANDL E AV+TI+ N+ +N VS I+  +  DA  +M+ +K     +  IDLDPYG  +
Sbjct: 151 ILANDLLENAVKTIEKNVNYNNVSDIVIPNKGDANAVMHMNKF---HYDVIDLDPYGSAA 207

Query: 551 IFLDSAVQSIQDGGLLLVTATDMAVLAGNS 640
            FLD+AVQS+   GLL +T TD AVLAGN+
Sbjct: 208 PFLDAAVQSVSKDGLLCITCTDSAVLAGNA 237


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +2

Query: 47  IFMRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVL---TLFIEDYKAEKL 217
           ++M +  ++N   +   +  I LT  + F      +N  LSI VL   TLF ED+ AE +
Sbjct: 167 LWMVLNCLTNAAFVLAMRKRIKLTNFRDF--DTMFYNNLLSIPVLVICTLFTEDWSAENI 224

Query: 218 AR 223
           A+
Sbjct: 225 AQ 226


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = +2

Query: 371 IIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHK 496
           ++A + + + +E I   +E ++ + + + +HD+  M MYK K
Sbjct: 99  MVAPNGTVKGIEHIPQLVETSKKNLLKDINHDEVLMEMYKEK 140


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 359 YATNIIANDLSEQAVETIKHNIEHNQVSRI 448
           + T++   D SE   + +  N+E NQ+S I
Sbjct: 95  FVTSLFTGDDSEHFSQDVGQNLEDNQISNI 124


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +2

Query: 122  EKVFYN-PVQEFNRDLSIA-VLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 295
            +K FY      FN   SI+  L  FI   K EK A+ +++ KK++         NP+  I
Sbjct: 1500 DKQFYEREFTFFNEVTSISGKLKPFIRKSKPEKKAKIDEEMKKIKLDVGVYLPSNPDGVI 1559

Query: 296  TILEALSATGLRS 334
              ++  S   L+S
Sbjct: 1560 VGIDRKSGKPLQS 1572


>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +2

Query: 203  KAEKLARFEKKQKKLE-TVQDEESGGNPEPKITILEALSATGLRSIRYAKEIPYATNIIA 379
            K  + AR  ++Q  LE +++   S  +     TIL  L     +    A+E+  ++ I +
Sbjct: 786  KERREARRARRQTALEESLKAPISIEDATDPQTILAILKQKKAKKKHAAREMEISSQIPS 845

Query: 380  NDLSEQAVETIKHNIEHNQVSRII 451
            ND S     T +  IE + VS  I
Sbjct: 846  NDSSNVQTPTAESEIEEDGVSEPI 869


>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 148

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 518 AIDLDPYGCPSIFLDSAVQSIQ 583
           AID++PYG P +F+   + S++
Sbjct: 6   AIDVEPYGFPPLFIAFQILSMK 27


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 492 INTLQSVLRLLIWTLMDALQYSSTLQYRAF 581
           +N + S L LL W++  A  Y+ +   +AF
Sbjct: 371 LNRMSSALPLLYWSMAHATLYAKSRNLKAF 400


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = +2

Query: 161 DLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKITILEA----LSATGL 328
           D+S  VL  F++++    L +  KK+K    VQD+    + + +I  +E     L+   L
Sbjct: 65  DISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLL 124

Query: 329 RSIRY 343
           R IR+
Sbjct: 125 RGIRF 129


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 371 IIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHKH 499
           +I N LSE++ +T +  +  +  SR I+  HD    +++   H
Sbjct: 241 LIVNKLSEKSNQTAEILVLRDLTSRFIDMIHDICDSVLFSRIH 283


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 248 ETVQDEESGGNPEPKITILEALSATGLRSIRYAK 349
           + V+ +  GG     +T LEA+  +G+ +IRYAK
Sbjct: 97  DVVELQLHGGTAVVDVT-LEAIKQSGIPNIRYAK 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,351,018
Number of Sequences: 5004
Number of extensions: 42880
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)