Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5j23
(671 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0220 + 32452831-32452944,32453618-32453911,32454416-324545... 115 4e-26
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179... 94 8e-20
05_03_0514 - 14921653-14921760,14921992-14922054,14922162-149223... 54 8e-08
01_04_0132 + 16469922-16470145,16472720-16472793,16473613-164737... 35 0.068
02_01_0454 + 3263666-3265375 32 0.36
08_02_1004 - 23461798-23462024,23462340-23462415,23463479-234636... 32 0.48
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755... 30 1.5
05_04_0421 + 21114569-21114664,21115042-21115223,21115376-21115640 29 2.6
05_03_0498 - 14720989-14722119,14722225-14722839 29 3.4
04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585... 29 3.4
03_02_0293 - 7166470-7167618 29 3.4
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 5.9
>03_06_0220 +
32452831-32452944,32453618-32453911,32454416-32454503,
32454596-32454717,32454985-32455142,32455201-32455273,
32455552-32455640,32455753-32455858,32455967-32456179,
32456726-32456920,32457051-32457128,32457209-32457523
Length = 614
Score = 115 bits (276), Expect = 4e-26
Identities = 57/112 (50%), Positives = 75/112 (66%)
Frame = +2
Query: 299 ILEALSATGLRSIRYAKEIPYATNIIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACM 478
+LEAL+A+GLRSIRYA+EI ++A D+ + +E K NI+ N S + +
Sbjct: 134 VLEALAASGLRSIRYAREIDVLEKVVALDIDKACIEACKRNIKFNGASAMSKIEPHLTDA 193
Query: 479 LMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQDGGLLLVTATDMAVLAG 634
+Y HP K F +D+DPYG PSIFLDSAVQ++ DGGLL+ TATDMAVL G
Sbjct: 194 RVYMLTHP-KEFDVVDIDPYGAPSIFLDSAVQAVADGGLLMCTATDMAVLCG 244
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Frame = +2
Query: 68 ISNLKTIKEGQAEICLTTE----KVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKK 235
+ + + ++EG+AEI + + +VFYNPVQ NRD+S+A+L FI + E A +K+
Sbjct: 8 LKDYEIVREGEAEIIINKKIAANEVFYNPVQVHNRDMSVALLRTFIAKREEEHKAMMDKR 67
Query: 236 QKKLETV-QDEESGGNPE 286
K V Q + SG N E
Sbjct: 68 DKAHNKVSQSKSSGPNGE 85
>10_06_0078 +
10416950-10417174,10417595-10417679,10417782-10417900,
10418200-10418287,10419400-10419452,10419876-10420015,
10420094-10420166,10420243-10420311,10420632-10420844,
10422304-10422498,10422581-10422658,10423456-10423590
Length = 490
Score = 94.3 bits (224), Expect = 8e-20
Identities = 81/202 (40%), Positives = 104/202 (51%), Gaps = 16/202 (7%)
Frame = +2
Query: 83 TIKEGQAEICLT-TEKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEK-KQKKLETV 256
TI+EG+AEI + VFYN Q NRDLSIAVL FI + E + + +L
Sbjct: 53 TIREGRAEIFADDSNSVFYNKAQVNNRDLSIAVLRSFISRRREEHDIQLRRGSHAELPPK 112
Query: 257 QD-EESG---GNPEPKIT----------ILEALSATGLRSIRYAKEIPYATNIIANDLSE 394
EE G G+ E K +LEAL+A+GLR+IRYA E+ +IA D
Sbjct: 113 HHAEELGHIRGSSEDKALSEEISYRAPKVLEALAASGLRAIRYALEVDGIGEVIAVD--- 169
Query: 395 QAVETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQ 574
N E N + T +YK K +DLDPYG P+ FLDSAVQ
Sbjct: 170 --------NNEGNNYNLATHT--------IYK-----KLVFKVDLDPYGSPAAFLDSAVQ 208
Query: 575 SIQDGGLLLVTATDMAVLAGNS 640
+ DGG+L+ +ATDMAVLAG +
Sbjct: 209 CVADGGILMCSATDMAVLAGGN 230
>05_03_0514 -
14921653-14921760,14921992-14922054,14922162-14922365,
14923318-14923369,14924099-14924706
Length = 344
Score = 54.4 bits (125), Expect = 8e-08
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 2/127 (1%)
Frame = +2
Query: 281 PEPKITILEALSATGLRSIRYAKEIPYATNIIANDLSEQAVETIKHNIEHNQVS--RIIE 454
P L+A+ G+R++RY ++ A + AND SE I N+ + + R
Sbjct: 80 PSAPFLCLDAMCGCGVRALRYLAQVG-ADFVWANDASEALRPVIVGNLSRFERAPDRRWA 138
Query: 455 TSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQDGGLLLVTATDMAVLAG 634
SH DA L+ + + F ID+D +G + ++ +A+ +++ GGLL +T+TD G
Sbjct: 139 VSHLDATRLLSERYLRREYFDVIDVDSFGGDAAYIRAALLALRIGGLLYLTSTDWRSARG 198
Query: 635 NSPRDML 655
R L
Sbjct: 199 YGSRSSL 205
>01_04_0132 +
16469922-16470145,16472720-16472793,16473613-16473755,
16474076-16474187,16475235-16475350,16475448-16475594
Length = 271
Score = 34.7 bits (76), Expect = 0.068
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 299 ILEALSATGLRSIRYAKEIPYATNIIANDLSEQAVETIKHNIEHNQVSRIIETSHDDA 472
+ + S G +I A+++ Y + ANDL+ AVE ++ NI N++ R IE + DA
Sbjct: 99 VCDVFSGVGPIAISAARKVKY---VYANDLNPTAVEYLERNIVLNKLERKIEVFNMDA 153
>02_01_0454 + 3263666-3265375
Length = 569
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +2
Query: 23 NKCFYINNIFMRMETISNLKTIKEGQAEIC-LTTEKVFYNPVQEFNRDLSIAVLTLFIE 196
NK FYIN++F+R+ I +L K+ I L +E + Y + + D SI +L F+E
Sbjct: 140 NKRFYINDLFLRVR-IGDLAQRKQALVTIGELLSEDIEYVKIVALDIDNSITLLISFLE 197
>08_02_1004 -
23461798-23462024,23462340-23462415,23463479-23463610,
23463927-23464004,23464919-23465320
Length = 304
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 380 NDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSK 508
+ LSE+ V + + +E +Q RII SH +Y+H P K
Sbjct: 211 DQLSERCVSCLYNIVEKHQGERIILVSHGGTIRELYRHASPMK 253
>03_02_0650 +
10174905-10175000,10175321-10175376,10175467-10175540,
10176215-10176753,10176845-10177186,10177520-10177879,
10177982-10178193,10178881-10179169,10179469-10180152
Length = 883
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/94 (24%), Positives = 41/94 (43%)
Frame = +2
Query: 164 LSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKITILEALSATGLRSIRY 343
+S+ L I++ K L FEKK KKL + Q ++ +PK + L+A+ I
Sbjct: 405 ISVKDLRSGIKELK-NLLENFEKKNKKLASNQAKKPAHTDQPKENKIPLLTASNFEEICG 463
Query: 344 AKEIPYATNIIANDLSEQAVETIKHNIEHNQVSR 445
K I + +++ +E + I + R
Sbjct: 464 EKTSVCILGIFKSSKAKENLEAVLSEISQKTLIR 497
>05_04_0421 + 21114569-21114664,21115042-21115223,21115376-21115640
Length = 180
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -3
Query: 531 SRSIAA--KRFEGCLCLYINIQASS*LVSMMRDTWLCSILCLIVSTACSERSFAMILVAY 358
SR+I + KR G +C I+ A+ M D + + C IV + + L+A
Sbjct: 73 SRAIPSETKRIVGVVCAVISWIAAVIAFVMFLDAGIVASECFIVREGFFAGAGVLALIAT 132
Query: 357 GISLA*RMLLRPVADSAS 304
+ L ++LRP D+A+
Sbjct: 133 ALGLTSYIVLRPQPDAAA 150
>05_03_0498 - 14720989-14722119,14722225-14722839
Length = 581
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 630 AKTAISVAVTSSKPPS*MLCTAESRNIEGHP*GSRSIAAKRFEG 499
++T +S V PP+ ML + E P GSR + A R +G
Sbjct: 36 SRTTLSAHVEKDDPPAAMLPAVDDGGREHRPSGSRYVLAARRDG 79
>04_01_0451 +
5845249-5846133,5846220-5846509,5855590-5856060,
5856898-5857063,5857100-5857498,5858031-5858075
Length = 751
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 371 IIANDLSEQAVETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDP 535
++++ QAVE + Q+ ++E +HD++ + + K F ID DP
Sbjct: 500 VVSDSKKAQAVELRMSGLRPFQIMEVMENNHDESEEVGFVMKDLYNFFTRIDADP 554
>03_02_0293 - 7166470-7167618
Length = 382
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 639 ELPAKTAISVAVTSSKPPS*MLCTAESRNIEGHP 538
++P+ T SVA +S+PP+ L AE E HP
Sbjct: 267 DVPSTTFSSVAAATSQPPAWQLVNAEHLFQEDHP 300
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Frame = +2
Query: 242 KLETVQD--EESGGNPEPKITILEALSATGLRSIRYAKEIPYATNIIAN--DLSEQAVET 409
KL+ V+D EE+ G+PE L++LSA L + + + A+ I+ N DL + ++T
Sbjct: 759 KLQAVKDCSEETYGSPEDDNNALKSLSAVELTQSQSRESM--ASTIMNNIRDLPDSELQT 816
Query: 410 IKHNI 424
I+ +
Sbjct: 817 IRSQL 821
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,531,975
Number of Sequences: 37544
Number of extensions: 255411
Number of successful extensions: 734
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -