Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j23
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical pr...   174   4e-44
AF059608-1|AAD13737.1|  526|Caenorhabditis elegans N2,N2-dimethy...   174   4e-44
U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate recep...    29   4.0  
AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic gl...    29   4.0  
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen prot...    28   5.3  
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U55371-1|AAL02525.1|  432|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.       28   6.9  
AY919615-1|AAY16564.1|  432|Caenorhabditis elegans FLP-2 recepto...    28   6.9  
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated...    28   6.9  
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated...    28   6.9  
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated...    28   6.9  
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated...    28   6.9  
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated...    28   6.9  
Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical p...    27   9.2  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    27   9.2  

>Z77136-4|CAB00881.1|  526|Caenorhabditis elegans Hypothetical
           protein ZC376.5 protein.
          Length = 526

 Score =  174 bits (424), Expect = 4e-44
 Identities = 96/200 (48%), Positives = 131/200 (65%), Gaps = 3/200 (1%)
 Frame = +2

Query: 53  MRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEK 232
           ++ E    +  I+EGQA++      VFYNPVQEFNRDL++ VL  F  D+  +K A  E+
Sbjct: 13  IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSADH--QKWAE-EQ 68

Query: 233 KQKKLETVQDEESGG---NPEPKITILEALSATGLRSIRYAKEIPYATNIIANDLSEQAV 403
           KQ K E    ++      N + KI IL+ALSA+GLR++R++KE+P    I+AND S+ AV
Sbjct: 69  KQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMANDFSDNAV 128

Query: 404 ETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQ 583
            +I+ N++ N V  I+E    DA M M +H+   KRF A+DLDPYG  S FLDSAVQ + 
Sbjct: 129 ASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVA 188

Query: 584 DGGLLLVTATDMAVLAGNSP 643
           D G+L+VT TDMAVL GN+P
Sbjct: 189 DRGILMVTCTDMAVLCGNTP 208


>AF059608-1|AAD13737.1|  526|Caenorhabditis elegans
           N2,N2-dimethylguanosine tRNA methyltransferase protein.
          Length = 526

 Score =  174 bits (424), Expect = 4e-44
 Identities = 96/200 (48%), Positives = 131/200 (65%), Gaps = 3/200 (1%)
 Frame = +2

Query: 53  MRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKAEKLARFEK 232
           ++ E    +  I+EGQA++      VFYNPVQEFNRDL++ VL  F  D+  +K A  E+
Sbjct: 13  IKSEDKEEVTVIQEGQAKVGFHGP-VFYNPVQEFNRDLTVTVLRQFSADH--QKWAE-EQ 68

Query: 233 KQKKLETVQDEESGG---NPEPKITILEALSATGLRSIRYAKEIPYATNIIANDLSEQAV 403
           KQ K E    ++      N + KI IL+ALSA+GLR++R++KE+P    I+AND S+ AV
Sbjct: 69  KQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMANDFSDNAV 128

Query: 404 ETIKHNIEHNQVSRIIETSHDDACMLMYKHKHPSKRFAAIDLDPYGCPSIFLDSAVQSIQ 583
            +I+ N++ N V  I+E    DA M M +H+   KRF A+DLDPYG  S FLDSAVQ + 
Sbjct: 129 ASIQENVKLNGVEDIVEAHFGDAVMTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVA 188

Query: 584 DGGLLLVTATDMAVLAGNSP 643
           D G+L+VT TDMAVL GN+P
Sbjct: 189 DRGILMVTCTDMAVLCGNTP 208


>U41547-1|AAA83192.2|  489|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 8 protein.
          Length = 489

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 433 VMFNIMLNCLNSLF*EIICNDIGSIWYFFSI 341
           V+F +M N +  ++ E+      SIW FFSI
Sbjct: 150 VIFLVMTNIIRKVYEEMTVTPFESIWVFFSI 180


>AF318612-1|AAK01100.1|  406|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-8 protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 433 VMFNIMLNCLNSLF*EIICNDIGSIWYFFSI 341
           V+F +M N +  ++ E+      SIW FFSI
Sbjct: 142 VIFLVMTNIIRKVYEEMTVTPFESIWVFFSI 172


>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
           protein Y87G2A.5 protein.
          Length = 1050

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +2

Query: 194 EDYKAEKLARFEKKQKKL 247
           E  KA KLA+FE+KQKKL
Sbjct: 18  EAEKAAKLAKFEEKQKKL 35


>AF036699-5|AAB88359.1|  290|Caenorhabditis elegans Collagen protein
           105 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 68  ISNLKTIKEGQAEICLTTEKVFYNPVQEFNR 160
           I+N KT  +G+ E C  + +  Y  VQ+F +
Sbjct: 37  INNAKTSLQGEIEFCRNSARDIYGEVQQFKQ 67


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
 Frame = +2

Query: 29  CFYINNIFMRMETISNLKTIKEG-----QAEICLTTEKVFYNPVQEFNRDLSIAVLTLFI 193
           CF + +   R E +  +K ++       +AEI + T++    P ++ ++ +S        
Sbjct: 10  CFDMEDPKPRKEALKKMKKVERSAPAKIEAEIPMETDE---KPAEDGDKPMSKT------ 60

Query: 194 EDYKAEKLARFEKKQKKLETVQDEESGGNPEPK 292
           +  K +K A  E+K++      + E+ G PEPK
Sbjct: 61  QKRKLKKAAAIERKERAERGEPEPEATGEPEPK 93


>U55371-1|AAL02525.1|  432|Caenorhabditis elegans Hypothetical
           protein T19F4.1b protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 194 EDYKAEKLARFEKKQKKLETVQDEESGGNPEPKITILEAL 313
           E++K  KL   EK++KKL  +   E  G PE  IT  E L
Sbjct: 382 EEHKLPKLPS-EKRKKKLHKMSAVEHRGMPEITITFSEDL 420


>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 137  NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 295
            NP  E   + + AV+   +     EKL+  E K+K+  T    +  G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415


>AY919615-1|AAY16564.1|  432|Caenorhabditis elegans FLP-2 receptor
           protein.
          Length = 432

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 194 EDYKAEKLARFEKKQKKLETVQDEESGGNPEPKITILEAL 313
           E++K  KL   EK++KKL  +   E  G PE  IT  E L
Sbjct: 382 EEHKLPKLPS-EKRKKKLHKMSAVEHRGMPEITITFSEDL 420


>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
            protein 89, isoform e protein.
          Length = 5992

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 137  NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 295
            NP  E   + + AV+   +     EKL+  E K+K+  T    +  G PEP +
Sbjct: 2724 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 2775


>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
            protein 89, isoform a protein.
          Length = 6632

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 137  NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 295
            NP  E   + + AV+   +     EKL+  E K+K+  T    +  G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415


>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
            protein 89, isoform g protein.
          Length = 7122

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 137  NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 295
            NP  E   + + AV+   +     EKL+  E K+K+  T    +  G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415


>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
            protein 89, isoform f protein.
          Length = 7441

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 137  NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 295
            NP  E   + + AV+   +     EKL+  E K+K+  T    +  G PEP +
Sbjct: 2724 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 2775


>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
            protein 89, isoform b protein.
          Length = 8081

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 137  NPVQEFNRDLSIAVLTLFIEDYKAEKLARFEKKQKKLETVQDEESGGNPEPKI 295
            NP  E   + + AV+   +     EKL+  E K+K+  T    +  G PEP +
Sbjct: 3364 NPAGEAKTEANFAVVKNLVPPEFVEKLSPLEVKEKE-STTLSVKVVGTPEPSV 3415


>Z92804-1|CAB07252.1|  338|Caenorhabditis elegans Hypothetical
           protein K05D4.2 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/60 (30%), Positives = 23/60 (38%)
 Frame = +2

Query: 32  FYINNIFMRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIEDYKAE 211
           FY   I+     I N   I E +   CL      Y   Q F  DLS   L ++   + AE
Sbjct: 149 FYCCYIWNGSNDIKNEIVIPEFREVYCLEPNDYAYTGAQYFYGDLSTGTLHMYTPSFAAE 208


>U23519-12|AAK31505.3| 1021|Caenorhabditis elegans Hypothetical
           protein F26G1.1 protein.
          Length = 1021

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 17  EQNKCFYINNIFMRMETISNLKTIKEGQAEICLTTEKVFYNPVQEFNRDLSIAVLTLFIE 196
           E+N+ F   +++MR+  ISN +T  +  A    T+    Y  ++E  + L + ++ L I+
Sbjct: 551 EENRKFVKKSVWMRVADISNFQTFVDCCA--AWTSYITKYYTLKEVTKILELVLVRLRID 608

Query: 197 D 199
           D
Sbjct: 609 D 609


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
           protein Y47G6A.29 protein.
          Length = 2460

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -3

Query: 129 TFSVVKHISAWPSFIVFKFDIVSILIKMLFI*KHLFCSLN 10
           T SVV    AW +F+V  F  VS L     I K+L  S N
Sbjct: 25  TASVVTLFLAWSTFVVLFFSRVSALFFTFVIDKYLRLSKN 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,042,639
Number of Sequences: 27780
Number of extensions: 243766
Number of successful extensions: 912
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)