Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5j21
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 43 4e-05
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 42 5e-05
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 38 0.001
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 38 0.001
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 29 0.68
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 28 1.2
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 27 2.7
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po... 26 4.8
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su... 25 6.3
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 342 DYDGFVVLHGTDTTAYGGSXLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 521
D G VV HGTD+ L + T K +V+ GA P +DG NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAMFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177
Query: 522 TQR 530
+ R
Sbjct: 178 SNR 180
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 42.3 bits (95), Expect = 5e-05
Identities = 25/63 (39%), Positives = 33/63 (52%)
Frame = +3
Query: 342 DYDGFVVLHGTDTTAYGGSXLSFMLETVGKTVVLTGAQVPIFQPRSDGNNNLLCAVLIAA 521
D G VV HGTD+ L + T K +V+ GA P +DG NLL AV++AA
Sbjct: 119 DVHGIVVTHGTDSLEETAIFLDMTVNTT-KPIVVVGAMRPSTAISADGPMNLLNAVVVAA 177
Query: 522 TQR 530
+ R
Sbjct: 178 SNR 180
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 37.5 bits (83), Expect = 0.001
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 279 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSXLSFMLETVGKTVVLTGA 452
S + T D +K+A+ I + + G V+ HGTD+ L + T K +V+ GA
Sbjct: 93 SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151
Query: 453 QVPIFQPRSDGNNNLLCAVLIAATQR 530
P +DG NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 37.5 bits (83), Expect = 0.001
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = +3
Query: 279 SSDFTIDDWIKMARDI--KRFYHDYDGFVVLHGTDTTAYGGSXLSFMLETVGKTVVLTGA 452
S + T D +K+A+ I + + G V+ HGTD+ L + T K +V+ GA
Sbjct: 93 SENLTPADVLKLAKLILAEVAKPNVHGIVITHGTDSLEETAMFLDLTISTA-KPIVVVGA 151
Query: 453 QVPIFQPRSDGNNNLLCAVLIAATQR 530
P +DG NLL AV +A++ +
Sbjct: 152 MRPSTAIGADGPMNLLNAVAVASSNQ 177
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 28.7 bits (61), Expect = 0.68
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 81 KNEKGVLVPQKDIESVIXKLPQLHDDAYWKNXLAGTDK 194
K E G+ + ++ + KL +L + A+W L+ TDK
Sbjct: 643 KYELGIAISGYALDKNVGKLVELINKAFWNTNLSNTDK 680
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 27.9 bits (59), Expect = 1.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 563 FCSKEHCYFWYALSG 519
FC KE+CYF +A +G
Sbjct: 511 FCPKENCYFMFACAG 525
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = -3
Query: 281 RIXEFIVFVNPVQNFNIR-VFSIR*X*VILLIXTSEXVLPVCIVM*LRXFXNNTLYIFLR 105
++ F +N V F IR VF++ VI LI T +LP C+++ L F
Sbjct: 293 KVANFWCTLNTV--FKIREVFTLHQLQVISLIFTLISILPSCVILFLYPRKRLLALGFAS 350
Query: 104 YQYAFFVF 81
+ FF+F
Sbjct: 351 ASWGFFLF 358
>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 458
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 302 IVYREIRRIXEFIVFVNP 249
+ Y+ I+R FIVF+NP
Sbjct: 97 VAYKGIKRSRRFIVFINP 114
>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/50 (24%), Positives = 19/50 (38%)
Frame = +3
Query: 195 KDYLXLPDGKDTDVKILYRIYEYDELXDSSDFTIDDWIKMARDIKRFYHD 344
K L +P ++EY L I+ + + A + FYHD
Sbjct: 34 KQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHD 83
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,701
Number of Sequences: 5004
Number of extensions: 48981
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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