Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j21
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415...    28   6.5  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    28   6.5  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    27   8.5  
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753...    27   8.5  

>07_03_1405 +
           26340645-26340921,26341003-26341226,26341315-26341562,
           26341622-26342051,26342630-26343049
          Length = 532

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 381 TAYGGSXLSFMLETVGKTVVLTGAQVPIFQP-RSDGNNNLLCAVLIAAT 524
           T  GG+ L+F + T+ +   + GA   +F P R DG    +  +L  +T
Sbjct: 425 TVPGGTMLTFPIATMHRDEEVWGADAGVFDPMRFDGGGGAMAKLLSFST 473


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +1

Query: 310 KWREILSGFTMITMDSWFCTA-PTQLRTVVRXCLSCWKPSERLLY 441
           KWR +L G  + +  +WFC+  P   R         W    ++ Y
Sbjct: 512 KWRRLLDGTALDSSTAWFCSMNPDSARQKCSIPEESWDLKRKITY 556


>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
            2590301-2590606,2590698-2590912,2591461-2591755,
            2591901-2592065,2592142-2592738,2593029-2593115,
            2593203-2593523,2594047-2596071
          Length = 1477

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 318  RDIKRFYHDYDGFVVLHGTDTTAYGGSXLSFMLETVGKTVVLTGAQVPIFQP 473
            RD+K  Y   D  +VLHG   T  GG  +  +  T      L GA   + +P
Sbjct: 1232 RDLKIKYRQ-DAPLVLHGITCTFEGGDKIGIVGRTGSGKTTLIGALFRLVEP 1282


>05_03_0030 +
           7529814-7530257,7530409-7530462,7531605-7532793,
           7532861-7533522
          Length = 782

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -3

Query: 452 STSEYNSLSDGFQHERQXRTTVRSCVGAVQNH--ESIVIMVKPLNISRHFYPIVYREIRR 279
           S  E  +L+D   +  Q  + + S   ++++H  E +V+++K   +  H  P V   +R 
Sbjct: 673 SCGEPQALADHVLNAWQRSSIINSIDPSLEDHVAEEVVLVLKLGLLCSHSSPKVRPSMRL 732

Query: 278 IXEFIVFVNPVQNFNIRVFSI 216
           + +++     +Q+F    FSI
Sbjct: 733 VMQYLEREATLQDFAFSFFSI 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,589
Number of Sequences: 37544
Number of extensions: 310964
Number of successful extensions: 692
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)