Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j19
         (726 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043183-1|AAH43183.1| 1284|Homo sapiens collagen, type XX, alph...    36   0.20 
AB040943-1|BAA96034.1| 1140|Homo sapiens KIAA1510 protein protein.     36   0.20 
BC041767-1|AAH41767.1|  637|Homo sapiens COL20A1 protein protein.      31   4.2  

>BC043183-1|AAH43183.1| 1284|Homo sapiens collagen, type XX, alpha 1
           protein.
          Length = 1284

 Score = 35.5 bits (78), Expect = 0.20
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 118 VRGARPPAQPLTNPALILIPHSISFVINIL--SKINLDWSPAERCPLIQV*MWQ 273
           ++G  P   P   PAL  +P   S V++ +  S I L W+PA R PL  + +W+
Sbjct: 359 LQGGSPRQGPAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWR 412


>AB040943-1|BAA96034.1| 1140|Homo sapiens KIAA1510 protein protein.
          Length = 1140

 Score = 35.5 bits (78), Expect = 0.20
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 118 VRGARPPAQPLTNPALILIPHSISFVINIL--SKINLDWSPAERCPLIQV*MWQ 273
           ++G  P   P   PAL  +P   S V++ +  S I L W+PA R PL  + +W+
Sbjct: 209 LQGGSPRQGPAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWR 262


>BC041767-1|AAH41767.1|  637|Homo sapiens COL20A1 protein protein.
          Length = 637

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 118 VRGARPPAQPLTN-PALILIPHSISFVINIL--SKINLDWSPAERCPLIQV*MWQ 273
           ++G  P   P    PAL  +P   S V++ +  S I L W+PA R PL  + +W+
Sbjct: 359 LQGGSPRQGPAAAAPALDTLPAPTSLVLSQVTSSSIRLSWTPAPRHPLKYLIVWR 413


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,424,692
Number of Sequences: 237096
Number of extensions: 1635639
Number of successful extensions: 2546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2545
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)