Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j19
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   3.9  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.8  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 51  CYMKI*VYNINAFEPDVLIW 110
           CYMK  +    A + DV++W
Sbjct: 70  CYMKCIMIATKAMKNDVILW 89


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 51  CYMKI*VYNINAFEPDVLIW 110
           CYMK  +    A + DV++W
Sbjct: 44  CYMKCIMIATKAMKNDVILW 63


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 415 LLKIAFALFFVFL 377
           + K+AF +FF+FL
Sbjct: 280 IAKVAFTIFFLFL 292


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 415 LLKIAFALFFVFL 377
           + K+AF +FF+FL
Sbjct: 280 IAKVAFTIFFLFL 292


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,292
Number of Sequences: 438
Number of extensions: 3496
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)