Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j17
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    30   0.13 
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual     27   1.6  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   3.8  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   6.6  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   6.6  

>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 30.3 bits (65), Expect = 0.13
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -2

Query: 350  MTGSFDYSLRYLNNSKIFWIFL 285
            +T +F++ +RY  NS++FWIF+
Sbjct: 1011 ITPNFNWDMRYHGNSQMFWIFV 1032


>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +3

Query: 99  KMVQSQPAAAMSTGAIPDIDLPA 167
           K+V  +PAA  STGAIP ++ PA
Sbjct: 49  KVVSQEPAAISSTGAIP-LNSPA 70


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 404  FFLWLPNYKFHSYNIFICMTGSFDY 330
            F+ W+ N  +HS  +F+C    F Y
Sbjct: 1049 FWSWITNGFYHSLLLFLCSIAVFYY 1073


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 407 LFFLWLPNYKFHSYNIFICM 348
           +F + +  +KFHS  +F+C+
Sbjct: 85  VFIIGICKHKFHSSTVFLCL 104


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 264 NLSQSKSQKDPKDLGVIQISQGIIKGT 344
           NL+      DPKDL + ++ + +IK T
Sbjct: 720 NLNTPNLSYDPKDLDISKVGKPVIKTT 746


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,919
Number of Sequences: 5004
Number of extensions: 23271
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)