Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j17
         (432 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75956-4|CAN99718.1|  252|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z75956-3|CAJ90494.1|  217|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z75956-2|CAJ90493.2|  384|Caenorhabditis elegans Hypothetical pr...    31   0.47 
Z75956-1|CAB00128.2|  489|Caenorhabditis elegans Hypothetical pr...    31   0.47 

>Z75956-4|CAN99718.1|  252|Caenorhabditis elegans Hypothetical
           protein R31.2d protein.
          Length = 252

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +3

Query: 99  KMVQSQPAAAMSTGAIPDIDLPARYKRQ-PL---SEEEIAYINGGGIV*CPSYSATIIEN 266
           K+  + PA A    AIP I      ++  P    SE E +++        PS  AT++E 
Sbjct: 144 KLADTSPAVAGIAAAIPIISAQVEEEQNDPTVLESEHEPSFVPPASAHQAPSTKATVVEE 203

Query: 267 LSQSKSQKDPKDL 305
             Q    ++P DL
Sbjct: 204 SKQVPEGREPSDL 216


>Z75956-3|CAJ90494.1|  217|Caenorhabditis elegans Hypothetical
           protein R31.2c protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +3

Query: 99  KMVQSQPAAAMSTGAIPDIDLPARYKRQ-PL---SEEEIAYINGGGIV*CPSYSATIIEN 266
           K+  + PA A    AIP I      ++  P    SE E +++        PS  AT++E 
Sbjct: 109 KLADTSPAVAGIAAAIPIISAQVEEEQNDPTVLESEHEPSFVPPASAHQAPSTKATVVEE 168

Query: 267 LSQSKSQKDPKDL 305
             Q    ++P DL
Sbjct: 169 SKQVPEGREPSDL 181


>Z75956-2|CAJ90493.2|  384|Caenorhabditis elegans Hypothetical
           protein R31.2b protein.
          Length = 384

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +3

Query: 99  KMVQSQPAAAMSTGAIPDIDLPARYKRQ-PL---SEEEIAYINGGGIV*CPSYSATIIEN 266
           K+  + PA A    AIP I      ++  P    SE E +++        PS  AT++E 
Sbjct: 276 KLADTSPAVAGIAAAIPIISAQVEEEQNDPTVLESEHEPSFVPPASAHQAPSTKATVVEE 335

Query: 267 LSQSKSQKDPKDL 305
             Q    ++P DL
Sbjct: 336 SKQVPEGREPSDL 348


>Z75956-1|CAB00128.2|  489|Caenorhabditis elegans Hypothetical
           protein R31.2a protein.
          Length = 489

 Score = 30.7 bits (66), Expect = 0.47
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
 Frame = +3

Query: 99  KMVQSQPAAAMSTGAIPDIDLPARYKRQ-PL---SEEEIAYINGGGIV*CPSYSATIIEN 266
           K+  + PA A    AIP I      ++  P    SE E +++        PS  AT++E 
Sbjct: 381 KLADTSPAVAGIAAAIPIISAQVEEEQNDPTVLESEHEPSFVPPASAHQAPSTKATVVEE 440

Query: 267 LSQSKSQKDPKDL 305
             Q    ++P DL
Sbjct: 441 SKQVPEGREPSDL 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,759,876
Number of Sequences: 27780
Number of extensions: 130243
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)