Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j16
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.1  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    27   2.6  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   3.4  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    26   4.5  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    26   4.5  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   6.0  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    25   7.9  
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        25   7.9  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 330  EYHCHTCNTKCDLNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEA 509
            EY  H       LN  T   +D SR    +KN     E  + + +QE+  L+ ++E +++
Sbjct: 1297 EYKRHNQEILLSLNSSTSTSSDASR----LKNELVSKENLIEELNQEIGHLKSELETVKS 1352

Query: 510  LANTVETK 533
             +  +E +
Sbjct: 1353 KSEDLENE 1360


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
 Frame = +3

Query: 252 KPWSFLSGFYSFMIMCCLLSVIYLMLEYHCHT-CNTKCDLNGITRNINDISRNLSLMKNN 428
           + W  +  FY+  I+  +   IYL L+Y C    +    L+ +  + N  ++   L KN 
Sbjct: 209 RDWDDVFLFYAAKIVKEIRDDIYLQLKYTCSAGVSFNPMLSKLVSSRNKPNKQTILTKNA 268

Query: 429 YEDLEIKLSKFSQELPKLEGQM-EILEALANTVETKDFGWNPNSPLLLN 572
            +D  + L     ++  L G+  E +  L  T   KD  WN +   L++
Sbjct: 269 IQDYLVSLK--ITDIRMLGGKFGEEIINLLGTDSIKDV-WNMSMDFLID 314


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 366 LNGITRNINDISRNLSLMKNNYEDLEIKLSKFSQ 467
           ++ I    N+I   L  MK  +E  E KLS+FS+
Sbjct: 115 IDQILGQTNNIESTLLSMKEKFESSEKKLSEFSE 148


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 375 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLE 485
           ++  I D S+   L+KN     E+ LS  S +LP  E
Sbjct: 598 VSATIKDESKTFELLKNIQRKYELILSGSSVDLPSAE 634


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 375 ITRNINDISRNLSLMKNNYEDLEIKLSKFSQELPKLEGQMEILEALANTVET 530
           I   IND+   +++   + EDLE   S F++++ + +   + LE   + +E+
Sbjct: 280 INTTINDLKSQMTITDESSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLES 331


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 456 KFSQELPKLEGQMEILEALANTVETKDFGWNPNSPLLLN 572
           KFSQ+  KLE +  +L  L++    +++   P   LLLN
Sbjct: 55  KFSQQTFKLENEYFLLRQLSSHPNGRNYAIAPAYILLLN 93


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 451 YQSFLKSYLSLKDKWKYLKPWRTLWKQRIL 540
           Y +  +   SLK+ ++++  WRT  KQ I+
Sbjct: 66  YATSWEKVKSLKELYEHISSWRTQGKQHIV 95


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 448 NYQSFLKSYLSLKDKWKYLKPWRTLWKQRILDGIRILL 561
           +Y  FL +  SL+   ++  PW+ LW+    D I  LL
Sbjct: 320 DYMKFLSNKTSLEGA-RFGLPWKRLWQNAKADEIDRLL 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,941
Number of Sequences: 5004
Number of extensions: 42949
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)