Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j14
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    30   0.29 
SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces...    30   0.39 
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    29   0.90 
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   6.3  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   8.4  

>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 51  ASALAQSVTSVFACIIQNFFPSTNFYNEIH 140
           ASAL Q+ TS+ A  + + FP+ NF N ++
Sbjct: 123 ASALCQNPTSMLAITLTSRFPTDNFLNTVY 152


>SPAC630.08c |erg25||C-4 methylsterol oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 216 IICVITGRIYLP*SWNSFQFEGWSSRCAVKLRLRTYDS*DTTAIYQFLWEQLRLLKLW 389
           II +  G +++P  W  F  +       + + LR + + D+ A Y F W   + L +W
Sbjct: 189 IILLGAGTVFVPLMWCYFTHDLHLVTMYIWITLRLFQAVDSHAGYDFPWSLNKFLPIW 246


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 90  CIIQNFFPSTNFYNEIHP 143
           C+I N FP+ NFY EI P
Sbjct: 123 CLIDNNFPTGNFYYEIGP 140


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
 Frame = -2

Query: 336 YLMSHKFEVSVLQHNGCSILQTET--NSSFTASKY 238
           Y  S K E+ V  HN  SIL T       FT SKY
Sbjct: 21  YAFSIKQEIIVSSHNASSILNTTAFWFVEFTESKY 55


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 218 YNFCEFDFYYAM---SFFHCEVIRKNWLRMYFIIKIGTWEKILD 96
           Y   +F+F   +   SF    +++ N  R+Y+ IK+   +KI+D
Sbjct: 196 YGIQDFNFLQTLGTGSFGRVHLVQSNHNRLYYAIKVLEKKKIVD 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,229
Number of Sequences: 5004
Number of extensions: 60318
Number of successful extensions: 125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)