Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j12
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018     33   0.30 
06_03_0615 - 22761375-22761760,22762218-22765026                       31   1.2  
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949...    29   2.8  
07_03_0630 - 20097672-20097772,20097983-20102012                       29   4.8  
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219...    29   4.8  
05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163...    28   6.4  
01_06_0122 - 26673255-26673594,26674539-26674546                       28   8.4  

>07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018
          Length = 671

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 207 PRSGTASAKSKANFRRLACSLTLSEVCNIVGTTM 308
           P +GTA++  +  FR  A S T++ +C+IVGT +
Sbjct: 493 PNAGTAASAGRFAFRAFAVSDTMAFLCSIVGTCL 526


>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = +1

Query: 259 RVALLSLKSVILWEQQWHPCAIVGSMTIMYLLIWLL 366
           R AL ++K+VIL       CA++GS+T++ +++W+L
Sbjct: 700 RTALKTVKTVIL------VCAVLGSITLLLVVVWIL 729


>02_02_0367 +
           9496893-9497022,9498262-9498442,9498519-9498660,
           9498757-9498826,9498920-9499089
          Length = 230

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +1

Query: 286 VILWEQQWHPCAIVGSMTIMYLLIWLLDLN--TLASIAIVGLI 408
           V+LW+ +    A++G  T++++L  ++D +  TL S  ++G++
Sbjct: 47  VLLWKDKKISAAVIGGATVLWVLFEVVDYHFLTLISHVLIGVL 89


>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 406 ILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICRSI 516
           + NFV    PVI + L    SW       F E CRS+
Sbjct: 383 VANFVGTAGPVILDPLQSDDSWALLRRYAFVEPCRSL 419


>06_03_0181 +
           17618888-17619125,17621503-17621683,17621765-17621906,
           17622002-17622071,17622162-17622307,17623382-17623948,
           17624558-17624641,17624723-17624797,17625049-17625217,
           17625395-17625586,17625662-17626053
          Length = 751

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +1

Query: 286 VILWEQQWHPCAIVGSMTIMYLLIWLLD--LNTLASIAIVGLI 408
           V+LW+ +     ++G  T++++L  +LD  L TL S  ++G +
Sbjct: 83  VLLWKDKKTSAVVIGGATVIWILFEVLDYHLLTLLSHVMIGAL 125


>05_01_0217 +
           1630083-1630205,1630467-1630710,1631695-1632508,
           1632775-1632844,1633007-1633239,1633345-1633564
          Length = 567

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 166 DNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLS----LKSVILWEQQW-HPCA 321
           D  I K+ +K +   +  +    V  TL+G R+ L S    L+    W+ +W +PC+
Sbjct: 438 DATIKKIADKLTQTAEAAEAAASVAHTLDGHRILLCSEIERLRHYKQWKDKWNNPCS 494


>01_06_0122 - 26673255-26673594,26674539-26674546
          Length = 115

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +1

Query: 148 EQLIKDDNFIAKMGEKSSTVQDQEQQVRKVKRTLEGWRVALLSLKSVILWEQQW 309
           ++++ DD   A   + ++    ++   R+ KR   GW+ A    ++V  W + W
Sbjct: 62  QRIMLDDGRRAAEVDDANGAAARKSGGRRRKRRTAGWKAAAAIYRAVACWRRPW 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,778,618
Number of Sequences: 37544
Number of extensions: 336746
Number of successful extensions: 967
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)