Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j12
         (711 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   1.0  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   7.2  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    23   7.2  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   7.2  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 1.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 424  FMVPVICNQLYGSSSWTGQHEKTFEE 501
            F V  ICN L   S++ G +  TFEE
Sbjct: 1041 FYVAEICNHLSPKSTFPGSNYATFEE 1066


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +1

Query: 190 EKSSTVQDQE--QQVRKVKRTLEGWRVALLSLKSVILWEQQWHPCAIVGSMTIMYLLIWL 363
           ++ ST Q  E   +VR+++  LE     L S+++   ++QQ H C +     + Y  ++L
Sbjct: 180 QEKSTNQGAEGTARVRELEARLEALEAQLQSMRAREEFQQQIHVC-MARKAWLEYEELFL 238

Query: 364 LDLNTLASIAI 396
           L   TL  + +
Sbjct: 239 LYSATLKDLKL 249


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 163 DDNFIAKMGEKSSTVQDQEQQVRKVKRTLE 252
           D+NF  + G K ++ Q Q+QQ ++ +  L+
Sbjct: 465 DENFSYRPGAKPNSGQQQQQQQQQQQYKLQ 494


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +3

Query: 231 KSKANFRRLACSLTLSEVCNIVGTTMASLCHC 326
           ++  N  +    + LSE+CN  G  +   C C
Sbjct: 463 RTSCNCEKNKKPMELSELCNFNGDYVCGQCQC 494


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,882
Number of Sequences: 2352
Number of extensions: 16433
Number of successful extensions: 29
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72758970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)