Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j10
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    27   2.7  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   3.6  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +1

Query: 418 RYWSIHDVQRYFLGDLHCEKILFTHQYPNLK-LPSRLGNTLWKTNTATKVLPKLYLKEFN 594
           R WS+    +YF   + CE   + +  P+   LP +    L+K     K L +    E  
Sbjct: 135 RVWSVFPAPKYFNPRISCESRTYEYLIPSFALLPPKPSCPLFK--KMQKNLSRKLDNELE 192

Query: 595 RSLEVTLKKMVS 630
           R+L  ++  ++S
Sbjct: 193 RNLVYSMNDLIS 204


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 373  DGLLVEDEVLLNAYSRYWSIHDVQR---YFLGDLHCEKILFTHQYPNLKL 513
            DG  +    L NA SR  S+ + +R   Y+  +   E +LF   YPN KL
Sbjct: 1385 DGCELASVQLDNALSRNCSLFERERQNLYYSDNQKLEDLLFYASYPNEKL 1434


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 21/84 (25%), Positives = 38/84 (45%)
 Frame = +1

Query: 472 EKILFTHQYPNLKLPSRLGNTLWKTNTATKVLPKLYLKEFNRSLEVTLKKMVSTKAQMNR 651
           +++    +YP++    RLGNT+         LP    +E  +  E    +++   AQ   
Sbjct: 197 QQVFEVEKYPHVYGDKRLGNTI-SVIGKKFALPAGSEREDYQKYE----EIIVPHAQRAP 251

Query: 652 LIISDQLINIDCLDYFKRKTFFDY 723
            +  ++L+ I  +D   RKTF  Y
Sbjct: 252 QMQGEKLLEISSMDILCRKTFLSY 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,961
Number of Sequences: 5004
Number of extensions: 58794
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)