Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j10
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564...    31   0.71 
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    30   2.2  
08_01_0843 - 8276619-8278991                                           29   5.0  
08_02_0086 - 12133709-12133781,12133860-12134011,12134501-121345...    28   6.6  

>04_04_1096 +
           30855192-30855225,30856135-30856208,30856293-30856467,
           30856842-30856918,30857042-30857279,30857414-30857478,
           30857628-30858086,30858253-30858465,30858613-30859002
          Length = 574

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 271 WLQNPRYYRPSPGYLYLEDWTKNPFTWLHY--VESSDGLLVEDEVLLNAYSRYWSIHDVQ 444
           ++  P  Y P P  ++   +  +   W  Y  V S+DG      V+ ++YS   ++ D Q
Sbjct: 77  FIYQPNVYTPQPHTVFSGGYLNHLGQWEEYPHVASADGTDAASPVMYSSYSPVPTMGDSQ 136

Query: 445 RYFLGDLHC 471
            Y+   LHC
Sbjct: 137 PYY--PLHC 143


>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
 Frame = +1

Query: 412 YSRYWSIHDVQRYFLGDLHCEKILFT-HQYPNLKLPSRLGNT----LWKTNTATKVLPKL 576
           + RY  + D   Y L       I    +   N K+PS L +       +       LP+ 
Sbjct: 130 FKRYHDVFDRWMYMLSRKKPRSITIKFYSGHNYKIPSNLFSLSDLEYLQIKRCIIGLPQE 189

Query: 577 YLKEFNRSLEVTLKKMVSTKAQMNRLIISDQLINIDCLDYFK 702
           + + F R   + LK   ST + +N LI S  L++  CL YF+
Sbjct: 190 F-EGFKRLTVLNLKYFSSTDSDINNLISSCPLLSTLCLKYFE 230


>08_01_0843 - 8276619-8278991
          Length = 790

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/99 (25%), Positives = 45/99 (45%)
 Frame = +1

Query: 427 SIHDVQRYFLGDLHCEKILFTHQYPNLKLPSRLGNTLWKTNTATKVLPKLYLKEFNRSLE 606
           +I + +   + D  CE  +F        LP R G  +  +NT   V  K+Y  E  R+  
Sbjct: 378 TIEECKAICMSDCACEIAMFDSYCSKQMLPIRYGKRVPGSNTTLFV--KVYSYEPKRTAS 435

Query: 607 VTLKKMVSTKAQMNRLIISDQLINIDCLDYFKRKTFFDY 723
            T   M+++ A +   ++S  L+++  +   KR+ F  Y
Sbjct: 436 ATSIAMLTSGAALG--MLSLVLLSVSVM-LCKRRPFLRY 471


>08_02_0086 -
           12133709-12133781,12133860-12134011,12134501-12134573,
           12134665-12134810,12135029-12135108,12136071-12136245
          Length = 232

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 229 CKFVKLIGHLDAVK--WLQNPRYYRPSPGYLYLEDWTKNPFTWLHYVESSDGLLVEDEVL 402
           CK+V  I   ++++  W+++ + Y  S     L+D    P   LHYV     + V  ++ 
Sbjct: 121 CKYVMSIDCAESLQKEWIRSMKPYPISLSLRNLQDILDGPHPTLHYVHKIANIAVNVKLA 180

Query: 403 LNAYSRYWS 429
           +   +  W+
Sbjct: 181 MEGTNPTWN 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,591
Number of Sequences: 37544
Number of extensions: 306023
Number of successful extensions: 590
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)