Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j07
         (140 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q00802 Cluster: Low molecular mass 30 kDa lipoprotein 1...    56   1e-07
UniRef50_P19616 Cluster: Microvitellogenin precursor; n=3; Mandu...    36   0.13 
UniRef50_Q2JIM8 Cluster: Putative uncharacterized protein; n=1; ...    31   5.0  

>UniRef50_Q00802 Cluster: Low molecular mass 30 kDa lipoprotein 19G1
           precursor; n=3; Bombyx mori|Rep: Low molecular mass 30
           kDa lipoprotein 19G1 precursor - Bombyx mori (Silk moth)
          Length = 256

 Score = 56.4 bits (130), Expect = 1e-07
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +2

Query: 2   AWGYNGRVIGSPEHYAWGIKAF 67
           AWGYNGRVIGSPEHYAWGIKAF
Sbjct: 235 AWGYNGRVIGSPEHYAWGIKAF 256


>UniRef50_P19616 Cluster: Microvitellogenin precursor; n=3; Manduca
           sexta|Rep: Microvitellogenin precursor - Manduca sexta
           (Tobacco hawkmoth) (Tobacco hornworm)
          Length = 249

 Score = 36.3 bits (80), Expect = 0.13
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +2

Query: 5   WGYNGRVIGSPEHYAWGIKAF 67
           WG+NG VIG+PE + W + AF
Sbjct: 229 WGHNGNVIGNPELFGWSVVAF 249


>UniRef50_Q2JIM8 Cluster: Putative uncharacterized protein; n=1;
           Synechococcus sp. JA-2-3B'a(2-13)|Rep: Putative
           uncharacterized protein - Synechococcus sp. (strain
           JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
           B-Prime)
          Length = 745

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 139 FFFINSFIAAHSHWFVVETLYYNLESLYTPSVMFGTSDYSA 17
           F+ + S    +S W++ + L  N    + P+ +FG  DYS+
Sbjct: 56  FYTLQSHGLPYSRWWLEDRLRQNSAQFFAPAALFGGYDYSS 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,500,100
Number of Sequences: 1657284
Number of extensions: 1644875
Number of successful extensions: 4118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4118
length of database: 575,637,011
effective HSP length: 27
effective length of database: 530,890,343
effective search space used: 10086916517
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)