Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j07
         (140 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    23   5.5  
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    23   7.3  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    23   7.3  
SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    22   9.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    22   9.6  

>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -2

Query: 130 INSFIAAH--SHWFVVETLYYNLESLYTPSVM 41
           +  F   H  S  F++ETL+ ++  L++PS++
Sbjct: 188 VEKFYECHDLSKKFLIETLHSDIYFLHSPSII 219


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 11  YNGRVIGSPEHYAWGIKAF*VII*SFDHEPMRM 109
           Y   ++G+PE    G KA   +I S  + P+R+
Sbjct: 139 YEDYIVGTPEGMMTGEKALSDLIESHLNRPLRL 171


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 43  LRLGY-KGFLSYNIKFRPRTNENEQ 114
           +R G+ K F S   K RPRTNE ++
Sbjct: 51  MRQGFEKSFPSSPNKKRPRTNEGDR 75


>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 139 FFFINSFIAAHSHWFVVETLYYNL 68
           FF +  +   +   F++E LYY L
Sbjct: 60  FFALEHYEVPYKWIFIIEMLYYEL 83


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 100 WFVVETLYYNLESLYTPSVMFGTSDY 23
           +F  E  YY L S+YT +V +  SD+
Sbjct: 451 YFPFEEFYYLLSSIYTYNVSW-ISDF 475


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 566,652
Number of Sequences: 5004
Number of extensions: 7344
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)