Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j07
         (140 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   0.25 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   0.25 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   1.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   3.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.4  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    18   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    18   9.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           18   9.5  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 0.25
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = -2

Query: 136 FFINSFIAAHSHWFVVETL 80
           +F+  F+  +S+WF+++ +
Sbjct: 225 YFVPLFLIIYSYWFIIQAV 243


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 0.25
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = -2

Query: 136 FFINSFIAAHSHWFVVETL 80
           +F+  F+  +S+WF+++ +
Sbjct: 101 YFVPLFLIIYSYWFIIQAV 119


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 125 FIYCCSFSLVRGRNFIL*LRKPLYPKRNVRDF 30
           FI+    SLVR R F + L K L   R   +F
Sbjct: 22  FIFLYFNSLVRFRRFTIELDKVLESPRGKYEF 53


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = -2

Query: 136 FFIN---SFIAAHSHWFVVETLYYNLESLYT 53
           +F+N   S IAA +H F   TLY N    Y+
Sbjct: 77  YFLNAKVSEIAALNHKFSSVTLYRNKTVKYS 107


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 70  SYNIKFRPRTNENE 111
           SYN   RP  NE+E
Sbjct: 65  SYNTLERPVANESE 78


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 70  SYNIKFRPRTNENE 111
           SYN   RP  NE+E
Sbjct: 65  SYNTLERPVANESE 78


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 70  SYNIKFRPRTNENE 111
           +YN+  RP  NE+E
Sbjct: 34  TYNVLERPVGNESE 47


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 94  VVETLYYNLESLYTPSVMFG 35
           +VETL   +   Y P   FG
Sbjct: 281 IVETLANFMRFYYNPFTPFG 300


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 82  LYYNLESLYTPSVMFGTS 29
           L+Y  + L+TP  +F +S
Sbjct: 127 LHYTGKVLWTPPAIFKSS 144


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 94  VVETLYYNLESLYTPSVMFG 35
           +VETL   +   Y P   FG
Sbjct: 281 IVETLANFMRFYYNPFTPFG 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,323
Number of Sequences: 438
Number of extensions: 629
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)