Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j04
         (339 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794...    26   6.6  
02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133     26   6.6  
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718...    26   6.6  
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044     26   8.7  
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    26   8.7  
02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...    26   8.7  

>07_03_1384 +
           26177053-26177227,26178754-26178823,26179427-26179469,
           26179888-26179965,26180010-26180027,26180103-26180187,
           26180273-26180355,26180489-26180546,26181258-26181368,
           26181769-26181826,26182005-26182101,26182585-26182620,
           26183107-26183137,26183993-26184046,26184159-26184301,
           26184411-26184560,26185084-26185317,26185450-26185509,
           26185974-26186204,26186829-26186981
          Length = 655

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  FLQNVRQTMELRKHDCRSPTLLRKFPSESLFV 149
           F +N   T+     DCRSP+   ++P E LFV
Sbjct: 237 FFRNGLPTLVAYPADCRSPSCYMRYPGE-LFV 267


>02_05_1359 + 35915507-35915905,35915999-35916188,35916298-35917133
          Length = 474

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 137 KFVRRW*H*NQQCNRKQRLPYNLLTELFLRINES 238
           KF+R W H  ++  R  RLP    ++  LRI +S
Sbjct: 33  KFLRDWRHKKERTARPDRLPLPKSSKKGLRIEDS 66


>02_02_0149 -
           7182562-7182891,7182989-7183575,7185334-7185433,
           7185547-7185563,7185928-7186369,7186501-7186629
          Length = 534

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 93  HDCRSPTLLRKFPSESLFVGGNTKINSA 176
           HDC+SP + R     ++ + GN K   A
Sbjct: 132 HDCKSPIIHRDIKPTNILLDGNLKAKIA 159


>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 333 FSFDIHFIEVMFEISNSVINANTVRFIYNFYRLSFIRK 220
           + + + F+   F I+ S+ N+NT   I NF     +RK
Sbjct: 87  YRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRK 124


>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 260 VLFIIFIDFHLFVKITLLINYMVVFASGCTVDFSVTT 150
           +L ++ +D   F+  + L+N+ ++F   CT+  S+ T
Sbjct: 110 ILALLHLDTPWFMLFSQLVNWFMLFCITCTLSNSMET 146


>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 333 FSFDIHFIEVMFEISNSVINANTVRFIYNFYRLSFIRK 220
           + + + F+   F I+ S+ N+NT   I NF     +RK
Sbjct: 80  YRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRK 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,191,865
Number of Sequences: 37544
Number of extensions: 117877
Number of successful extensions: 291
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)