Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j04
         (339 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065903-1|BAC06118.1|  313|Homo sapiens seven transmembrane hel...    28   6.4  
AB065886-1|BAC06103.1|  313|Homo sapiens seven transmembrane hel...    28   6.4  
U40215-1|AAC50718.1|  478|Homo sapiens synapsin IIb protein.           28   8.5  
BC051307-1|AAH51307.1|  582|Homo sapiens synapsin II protein.          28   8.5  
AF077737-1|AAC33789.1|  478|Homo sapiens synapsin IIb protein.         28   8.5  
AF077671-1|AAC28368.1|  582|Homo sapiens synapsin IIa protein.         28   8.5  
AB209088-1|BAD92325.1|  514|Homo sapiens synapsin II isoform IIb...    28   8.5  

>AB065903-1|BAC06118.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 272 QIQFVLFIIFIDFHLFV 222
           ++Q VLF+IF+ F+LF+
Sbjct: 22  EVQLVLFVIFLSFYLFI 38


>AB065886-1|BAC06103.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 272 QIQFVLFIIFIDFHLFV 222
           ++Q VLF+IF+ F+LF+
Sbjct: 22  EVQLVLFVIFLSFYLFI 38


>U40215-1|AAC50718.1|  478|Homo sapiens synapsin IIb protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  LSAFYKTCDKPWSYANMTA 102
           L + Y  CDKPW +A + A
Sbjct: 216 LESIYNFCDKPWVFAQLVA 234


>BC051307-1|AAH51307.1|  582|Homo sapiens synapsin II protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  LSAFYKTCDKPWSYANMTA 102
           L + Y  CDKPW +A + A
Sbjct: 216 LESIYNFCDKPWVFAQLVA 234


>AF077737-1|AAC33789.1|  478|Homo sapiens synapsin IIb protein.
          Length = 478

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  LSAFYKTCDKPWSYANMTA 102
           L + Y  CDKPW +A + A
Sbjct: 216 LESIYNFCDKPWVFAQLVA 234


>AF077671-1|AAC28368.1|  582|Homo sapiens synapsin IIa protein.
          Length = 582

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  LSAFYKTCDKPWSYANMTA 102
           L + Y  CDKPW +A + A
Sbjct: 216 LESIYNFCDKPWVFAQLVA 234


>AB209088-1|BAD92325.1|  514|Homo sapiens synapsin II isoform IIb
           variant protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 46  LSAFYKTCDKPWSYANMTA 102
           L + Y  CDKPW +A + A
Sbjct: 252 LESIYNFCDKPWVFAQLVA 270


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,173,670
Number of Sequences: 237096
Number of extensions: 708252
Number of successful extensions: 1436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1436
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1852524224
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)