Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j02
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    26   4.7  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   8.2  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.2  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 117  ALNVCIQKKLVLPLCGETKNSKTLKNFMA 31
            A+N+C+ K+L   + G   N++ +KN +A
Sbjct: 952  AMNLCVNKELFSKVVGILNNAEEIKNKIA 980


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 552  KEMYYYLIIFIKSMRIIQV*WKVVITNHE 466
            K++Y+YL   +    ++QV W  +I  HE
Sbjct: 1020 KDVYFYLKDLVYRRFLLQVNWAEIIDAHE 1048


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 455 DRIISLTTVRLENNLVERKVDFVVYNVHASFTVYT 351
           D + +L   R+   L+  KVDFV  N+      YT
Sbjct: 384 DALQALEVARVHEKLLSDKVDFVTLNLVKESKTYT 418


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 159 NIVDMINSEVAFKIA-LNVCIQKKLVLPLCGETKNSKTLKNF 37
           NI  +++ +VA   A     + + LV+P+C  T N+KT K++
Sbjct: 185 NIAAVLSHKVAASPANFPPLVLQLLVVPVCDNTANAKTHKSW 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,705
Number of Sequences: 5004
Number of extensions: 50779
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)