Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5j02
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associa...    29   2.5  
U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    29   2.5  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        29   2.5  
AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin assoc...    29   2.5  
Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U28991-2|AAK68307.1|  679|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform b protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 171 LIVNNIVDMINSEVAFKIALNVCIQKKLVLPLCGETKNSKTLKNFMAI 28
           L++ +++    SEV   + LN+C++K+    +CG+      L   M+I
Sbjct: 373 LLMKDVLSGTGSEVTKAVLLNICLEKRNAQLVCGQRGQGLDLLMEMSI 420


>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 171 LIVNNIVDMINSEVAFKIALNVCIQKKLVLPLCGETKNSKTLKNFMAI 28
           L++ +++    SEV   + LN+C++K+    +CG+      L   M+I
Sbjct: 390 LLMKDVLSGTGSEVTKAVLLNICLEKRNAQLVCGQRGQGLDLLMEMSI 437


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 171 LIVNNIVDMINSEVAFKIALNVCIQKKLVLPLCGETKNSKTLKNFMAI 28
           L++ +++    SEV   + LN+C++K+    +CG+      L   M+I
Sbjct: 390 LLMKDVLSGTGSEVTKAVLLNICLEKRNAQLVCGQRGQGLDLLMEMSI 437


>AB017107-1|BAA88838.1|  679|Caenorhabditis elegans Kinesin
           associated protein kap-1 protein.
          Length = 679

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -1

Query: 171 LIVNNIVDMINSEVAFKIALNVCIQKKLVLPLCGETKNSKTLKNFMAI 28
           L++ +++    SEV   + LN+C++K+    +CG+      L   M+I
Sbjct: 373 LLMKDVLSGTGSEVTKAVLLNICLEKRNAQLVCGQRGQGLDLLMEMSI 420


>Z98877-2|CAB11570.1|  907|Caenorhabditis elegans Hypothetical
           protein Y69H2.2 protein.
          Length = 907

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 555 INFLASFCVWCSYAINYVNKY*ND-CGT 635
           I F   FC WC  A+  V++  ND CGT
Sbjct: 49  IRFQNDFCSWCIDAVPIVDQCGNDPCGT 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,625,929
Number of Sequences: 27780
Number of extensions: 276569
Number of successful extensions: 706
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)