Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5i19
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    29   0.90 
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    26   6.4  

>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 723 IVAYAVIELIELSLLTDYGISPEDHISFFQGHSERTFPTVL 601
           ++A   IE++  +L +   + P DH++  Q  S  TFPTV+
Sbjct: 126 VIANRAIEILGGTLGSKKPVHPNDHVNMSQS-SNDTFPTVM 165


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 183 GFPERRAEKTQALQARK---EPKVREVQRDCK 269
           G P++RAEK +A ++RK   E K ++ + D K
Sbjct: 2   GNPKKRAEKAEAAKSRKQDEEKKKKDAEEDEK 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,977
Number of Sequences: 5004
Number of extensions: 31439
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)