Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5i19
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359...    28   6.6  
10_02_0091 - 5190536-5191794,5191878-5192030,5192501-5193099,519...    28   8.8  
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538...    28   8.8  

>08_01_0404 -
           3590296-3590409,3590529-3590819,3592414-3592461,
           3592559-3592795,3593668-3593704,3594311-3594627
          Length = 347

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = -3

Query: 714 YAVIELIELSLLTDYGISPEDHISFFQGHSERTFPTVLL 598
           YA IE +   L T+YGIS ED I +  G S  + PT+ L
Sbjct: 125 YADIEAVYQCLETEYGISQEDLILY--GQSVGSGPTLHL 161


>10_02_0091 -
           5190536-5191794,5191878-5192030,5192501-5193099,
           5193771-5193837,5194177-5195170
          Length = 1023

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +1

Query: 526 LLMRLWKRHSKLQLSTSYWYK 588
           +L+R WKRH++ +L T Y+ K
Sbjct: 625 VLIRRWKRHAQKRLQTKYFRK 645


>08_01_0612 +
           5378190-5378251,5378926-5379244,5379381-5379671,
           5380520-5380768,5380843-5380967,5381487-5381585,
           5381668-5382352
          Length = 609

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 171 VSARGFPERRAEKTQALQARKEPKVREVQRDCKGKCATSI 290
           + ARG+P  +  K   L   K P+ +E   +  G CA  +
Sbjct: 483 MEARGYPADKKAKNILLSLAKTPEEQEEANELTGNCAIQL 522


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,455
Number of Sequences: 37544
Number of extensions: 201548
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)