Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5i12
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine rece...    28   5.9  
U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine rece...    28   5.9  
Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U97015-4|AAB52342.1|  245|Caenorhabditis elegans Hypothetical
           protein F48C1.6 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 125 WNCYNFSKSTSNYENVYRKNQ 187
           W  Y+ +KS++NYE++ R+N+
Sbjct: 121 WKKYDLAKSSTNYEDIRRQNR 141


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 332 VKRHDSVQGFSMYSYLYWN*GANTIASALTSIGAY 228
           VKR D    FS Y YL +   AN   S +  +GA+
Sbjct: 258 VKRRDLAHNFSPYFYLLYLYEANPTMSQIIGLGAF 292


>U80839-3|AAB37909.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein72 protein.
          Length = 344

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 582 LKFLMTKYKIYIILQCFRVVYSCHKYSFAIISICFSYTYN 463
           + F +T Y  Y  L  F V Y+       ++ IC  YT N
Sbjct: 82  VSFFITSYNFYPSLASFSVGYATALNFPTVVQICILYTIN 121


>U00046-4|AAC47043.2|  308|Caenorhabditis elegans Serpentine
           receptor, class v protein1 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +1

Query: 292 EYILKPCTESCLFTVLIFHLSVFFRPSKKV*NAVKFRLFLHKSIVPIFLNIFN 450
           EY+    +  CL   ++F   +F   ++   N   FRL +H SI  I + +F+
Sbjct: 13  EYVSTAISLVCLPINILFVYILFVERNRPPYNTPFFRLCIHLSIADILMELFS 65


>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +3

Query: 51  FKNIFFITFIHSRGPAVVEIRL*LIGIAITSVKVHRTMKTCTGKIKNMYYGIGR*ILK 224
           F +I F +F  + GP +V  +L  +G AI +V V RT+    GK+ ++    G  +L+
Sbjct: 242 FSSISFFSF-QNIGPYIVVAKL--LGCAIEAVLVSRTLIKKNGKLNSISSRSGAGVLE 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,191,981
Number of Sequences: 27780
Number of extensions: 238835
Number of successful extensions: 608
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)