Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5i08
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     31   0.58 
10_08_0332 - 16843295-16843356,16843884-16846656                       31   1.0  
10_08_0330 - 16816497-16819952                                         30   1.3  
03_02_1002 + 13124398-13124994,13125116-13125346,13125993-131262...    28   5.4  

>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +2

Query: 8   LSIRDFTKFLKTKTDLYQDSXLDSXNGTGQVCFLDSTTISYIDAATRSLVXRYID--PKH 181
           L+  DF KF    T  +    L+S NG+     L S  ++Y+D +  +L  +  D  P+ 
Sbjct: 176 LTDEDFAKFSPMPTVTFMSLYLNSFNGSFPEFILKSGNVTYLDLSQNTLFGKIPDTLPEK 235

Query: 182 FTGMKY 199
              ++Y
Sbjct: 236 LPNLRY 241


>10_08_0332 - 16843295-16843356,16843884-16846656
          Length = 944

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 8   LSIRDFTKFLKTKTDLYQDSXLDSXNGTGQVCFLDSTTISYIDAATRSLVXRYID--PKH 181
           L+ +DF KF    T  +    L+S NG+     L S  I+Y+D +  +L  +  D  P+ 
Sbjct: 182 LTDQDFGKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGNITYLDLSQNTLFGKIPDTLPEK 241

Query: 182 FTGMKY 199
              ++Y
Sbjct: 242 LPNLRY 247


>10_08_0330 - 16816497-16819952
          Length = 1151

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +2

Query: 8   LSIRDFTKFLKTKTDLYQDSXLDSXNGTGQVCFLDSTTISYIDAATRSL---VXRYIDPK 178
           L+  DF KF    T  +    L+S NG+     L S +I+Y+D +  +L   +   +   
Sbjct: 175 LTDHDFRKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGSITYLDLSQNALFGPIPDMLPNL 234

Query: 179 HFTGMKYNRYSRRIRVRL 232
            F  + +N +S  I   L
Sbjct: 235 RFLNLSFNAFSGPIPASL 252


>03_02_1002 +
           13124398-13124994,13125116-13125346,13125993-13126282,
           13126405-13126498
          Length = 403

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 154 QRSRSCVYITNRSAVEKTHLTRPVXGIQXRVL 59
           Q S  C  ++N S++E+TH T P  G   +VL
Sbjct: 315 QMSELCPSMSNGSSMEETHQTNPGNGTPMQVL 346


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,626,840
Number of Sequences: 37544
Number of extensions: 156413
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)