Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5i08
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   0.81 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.81 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    25   0.81 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    25   0.81 

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -2

Query: 247 KSWDTKSNSNSSRIAVILHASKVLRIDIAXYQRSRSCVYITNRSAVEKTHLTRPVXGIQX 68
           K + T SNS  SR     H S       + Y R RSC    NR   EK      +   + 
Sbjct: 197 KKYATSSNSLRSRTHGFQHTS-------SRYSRERSCSRDRNREYKEKDRRYEKLHNEKE 249

Query: 67  RVLVEVSFR 41
           ++L E + R
Sbjct: 250 KLLEERTSR 258


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -2

Query: 247 KSWDTKSNSNSSRIAVILHASKVLRIDIAXYQRSRSCVYITNRSAVEKTHLTRPVXGIQX 68
           K + T SNS  SR     H S       + Y R RSC    NR   EK      +   + 
Sbjct: 208 KKYATSSNSLRSRTHGFQHTS-------SHYSRERSCSRDRNREYKEKDRRYEKLHNEKE 260

Query: 67  RVLVEVSFR 41
           ++L E + R
Sbjct: 261 KLLEERTSR 269


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -2

Query: 247 KSWDTKSNSNSSRIAVILHASKVLRIDIAXYQRSRSCVYITNRSAVEKTHLTRPVXGIQX 68
           K + T SNS  SR     H S       + Y R RSC    NR   EK      +   + 
Sbjct: 208 KKYATSSNSLRSRTHGFQHTS-------SRYSRERSCSRDRNREYKEKDRRYEKLHNEKE 260

Query: 67  RVLVEVSFR 41
           ++L E + R
Sbjct: 261 KLLEERTSR 269


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -2

Query: 247 KSWDTKSNSNSSRIAVILHASKVLRIDIAXYQRSRSCVYITNRSAVEKTHLTRPVXGIQX 68
           K + T SNS  SR     H S       + Y R RSC    NR   EK      +   + 
Sbjct: 208 KKYATSSNSLRSRTHDFQHTS-------SRYSRERSCSRDRNREYKEKDRRYEKLHNEKE 260

Query: 67  RVLVEVSFR 41
           ++L E + R
Sbjct: 261 KLLEERTSR 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,422
Number of Sequences: 438
Number of extensions: 2322
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)