Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5i03
(188 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch... 25 1.7
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 25 1.7
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 24 3.0
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 24 3.0
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 23 4.0
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 23 5.3
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 23 7.0
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 23 7.0
SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch... 23 7.0
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 22 9.3
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 22 9.3
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 22 9.3
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 22 9.3
>SPAC17G8.11c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 24.6 bits (51), Expect = 1.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 188 FFFYFQFHLILSLVVGLFG 132
F+F+F LILS V LFG
Sbjct: 6 FYFFFFLTLILSATVYLFG 24
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 24.6 bits (51), Expect = 1.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 18 NKKNPLISDFTNINRGFDF 74
+K NP +DFTN +G DF
Sbjct: 93 SKDNPQNNDFTNSLQGLDF 111
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 23.8 bits (49), Expect = 3.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 97 RAHKSNPHILQAPNKPTTKDKIK*N 171
R +NP+ + AP KPT+ + + N
Sbjct: 459 RPFTNNPNPISAPEKPTSGESLSLN 483
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 23.8 bits (49), Expect = 3.0
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -1
Query: 119 CGFDLWARFYYYFTYEIKSSIYI 51
CGF F + TY++ +IY+
Sbjct: 260 CGFSQTGEFVFATTYQMAHAIYV 282
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 23.4 bits (48), Expect = 4.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 109 IYGHDFIIILHMKSNPRFIFVKSDI 35
+Y HD + ++H PR IF+ S +
Sbjct: 479 LYLHDAMHLVHRDLKPRNIFLSSGV 503
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 23.0 bits (47), Expect = 5.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 109 SNPHILQAPNKPTT 150
SN HIL+A N+P T
Sbjct: 176 SNGHILEALNRPNT 189
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 22.6 bits (46), Expect = 7.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 3 SVYKDNKKNPLISDFTNI 56
SV +D KK P+I DF I
Sbjct: 501 SVIEDAKKLPVIGDFLKI 518
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 22.6 bits (46), Expect = 7.0
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -2
Query: 133 ELVKYVDSIYGH-DFIIILHMKSN--PRFIFVKSDISGFFLLSL 11
E V +++ ++ D + H+ N P F+ +++ +SG +SL
Sbjct: 89 ESVLFLEKVFNAVDICVKFHLSINTKPTFVLLENKVSGLTKISL 132
>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 22.6 bits (46), Expect = 7.0
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = -2
Query: 154 LWSSVYLELVKYVDSIY 104
+WS YLE++ Y+++ +
Sbjct: 184 VWSIFYLEILPYIEATF 200
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 22.2 bits (45), Expect = 9.3
Identities = 7/16 (43%), Positives = 10/16 (62%)
Frame = -3
Query: 123 NMWIRFMGTILLLFYI 76
N+W G I+ LF+I
Sbjct: 91 NIWTHLFGAIVFLFFI 106
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 22.2 bits (45), Expect = 9.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 145 SVYLELVKYVDSIYGHDFIIILHMKSNPRF 56
S+ + LV +D G D +I KSN RF
Sbjct: 67 SIVMGLVTAMDIKAGRDLLIGRDHKSNARF 96
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 22.2 bits (45), Expect = 9.3
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -2
Query: 157 YLWSSVYLELVKYVDSI 107
YLW +V L K+ DSI
Sbjct: 81 YLWRTVITYLAKHPDSI 97
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 22.2 bits (45), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 185 FFYFQFHLILSLVVGLFGACKICGF 111
F YFQ + + L+V + G IC F
Sbjct: 625 FKYFQNNSLQHLLVPVLGLASICVF 649
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 748,117
Number of Sequences: 5004
Number of extensions: 12093
Number of successful extensions: 29
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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