Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5i03
(188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0130 - 12609417-12610462,12610786-12611040,12611139-126112... 27 1.6
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 27 1.6
09_04_0160 + 15226762-15227032,15227138-15227373,15227469-152275... 27 2.1
07_01_0766 - 5885207-5885791,5885874-5886224,5886252-5886269,588... 27 2.8
09_04_0126 + 14874739-14875581 26 3.7
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658... 26 4.9
03_02_0191 - 6270591-6271364,6271458-6272168 25 6.4
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 25 8.5
>09_03_0130 -
12609417-12610462,12610786-12611040,12611139-12611253,
12611376-12611428,12611854-12612114,12612252-12612302,
12612412-12612660,12612779-12613007,12613292-12613666
Length = 877
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2
Query: 142 VYLELVKYVDSIYGHDFIIILHMKSNPRFIFVK 44
VY ELV+ + SI+GH + + M S F+ +K
Sbjct: 641 VYNELVQGIPSIFGHLLVTLPAMHSTIVFVCIK 673
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 140 LFGACKICGFDLWARFYYYFTYEIKSSIYICKVRY 36
LF AC +CGF + Y Y + + CK +Y
Sbjct: 28 LFTACDVCGFPVCRPCYEYERKDGSQACPQCKTKY 62
>09_04_0160 +
15226762-15227032,15227138-15227373,15227469-15227565,
15227657-15227783,15227870-15228482,15228572-15228835,
15228918-15229130,15229253-15229460,15229552-15229748,
15229830-15230183,15230287-15230874
Length = 1055
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = -1
Query: 140 LFGACKICGFDLWARFYYYFTYEIKSSIYICKVRY 36
LF AC CGF + Y Y E + CK RY
Sbjct: 52 LFVACNECGFPVCRPCYEYERREGTQNCPQCKTRY 86
>07_01_0766 -
5885207-5885791,5885874-5886224,5886252-5886269,
5886339-5886541,5886632-5886890,5887052-5887264,
5887357-5887482,5887590-5887727,5887817-5888162,
5888254-5888520,5888983-5889172,5889264-5889363,
5889444-5889694,5889990-5890182,5890313-5890336
Length = 1087
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 140 LFGACKICGFDLWARFYYYFTYEIKSSIYICKVRY 36
+F AC +CGF + Y Y + + CK +Y
Sbjct: 34 VFAACDVCGFPVCRPCYEYERKDGTQACPQCKTKY 68
>09_04_0126 + 14874739-14875581
Length = 280
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -1
Query: 176 FQFHLILSLVVGLFGACKICGFDLWARFYYYFTYEIKSSIYIC 48
+ F +L L+ G + I GF R Y+ Y+IK + C
Sbjct: 168 YDFGYLLKLLTGTYLPDTITGFFDLIRIYFPVVYDIKHLMRFC 210
>01_06_0356 +
28662956-28664043,28664255-28665139,28665227-28665840,
28665929-28666338
Length = 998
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -2
Query: 145 SVYLELVKYVDSIYGHDFIIILHMKSNPRFIFVKSDI 35
SV L++ ++ ++ H F ++LH P I + +D+
Sbjct: 792 SVMLDVAMAMEYLHHHHFEVVLHFDLKPSNILLDNDM 828
>03_02_0191 - 6270591-6271364,6271458-6272168
Length = 494
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 154 LWSSVYLELVKYVDSIYGHDFIIILHMKSNPRFIFV 47
LW S+ L+LV + S++ F+ ++ S PR +++
Sbjct: 54 LWRSLQLDLVHILCSVFLVVFVGTVYFMSRPRPVYL 89
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 157 YLWSSVYLELVKYVDSIYGHDFIIILHMKSN 65
+LW+ +YL+ V++ D F I H K+N
Sbjct: 348 FLWAVLYLDYVEFGDKNIPIGFPRISHWKNN 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,122,757
Number of Sequences: 37544
Number of extensions: 58547
Number of successful extensions: 142
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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