Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h24
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p...    28   1.4  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    27   2.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.2  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.3  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   7.5  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   9.9  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    25   9.9  

>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 596 KTASTAIPPEATPVME*N--VNFDILK*SKKTRAEPAAPQPSPNN 468
           +T +TA PPE  P+ME    VN  +L     + ++P +  P+P++
Sbjct: 276 RTLTTASPPEQIPLMEPQVYVNPQVLPGRLSSLSKPVSLPPTPSS 320


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -2

Query: 318  LETERVVQNGNVRSTHHQIGQSNKRSPTRFSPVFLFRRIDENYLHW 181
            LE +  +Q  +V +  +     NK         +L   +DENYLHW
Sbjct: 1576 LEEKIALQRNSVYAMFNSSRPGNKNC-NEMLLTYLSNALDENYLHW 1620


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 263 LAKAINAAPHDFLLFSFLEGSTRTIFTGPTNSTVGCW-SFAH-SRSHTLSARFLGI 102
           L KAI+    DFL       ST    +G  NST   W  +A  S  +T ++ F G+
Sbjct: 207 LTKAISENSFDFLSIHTFNSSTGEGCSGSRNSTFDAWVEYAEDSAYNTNTSLFYGV 262


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 263 LAKAINAAPHDFLLFSFLEGSTRTIFTGPTNSTVGCW 153
           LAK  N   ++ LL SFL G+T+ I   PT     C+
Sbjct: 229 LAKRGNGVFNELLLDSFLPGTTQAIKGYPTQYFGSCF 265


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 473 SDLVVERRVPLLFSWITLKCRNLHFIPLQV 562
           SDL+    +PL+ SW+ +   N   +P QV
Sbjct: 2   SDLLERGSLPLVKSWLAITFANEEDLPFQV 31


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 203 STRTIFTGPTNSTVGCWSF-AHSRSHTLSARFLG 105
           +T  IF+G  + T+ CWS  A+  S ++S    G
Sbjct: 350 ATHHIFSGGHDGTIRCWSLPANQTSDSISKILTG 383


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 290 VMLEAPIIKLAKAINAAPHDFLLFSF 213
           V ++  I+KLAK  + +P DFL+  F
Sbjct: 309 VQVQNLILKLAKDYDMSPEDFLMDDF 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,347
Number of Sequences: 5004
Number of extensions: 57718
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)