Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h24
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924...    29   2.5  
05_04_0002 + 17031662-17032264                                         29   4.4  
06_01_0137 - 1045301-1047601                                           28   5.9  
06_01_0124 - 958935-959967,959985-961222                               28   7.7  

>01_01_1161 +
           9244628-9245748,9247696-9247828,9248233-9248448,
           9249802-9249957,9250788-9250979,9251118-9251234,
           9251822-9252193
          Length = 768

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 225 PVFLFRRIDENYLHWPNEFDGRLLVLRTFKVTY--SVCEVFRHQRSTFHFENNLKIYR 58
           P+  +RR +E  L W  E     +V RT +     S C+ + + R+  HF    KIY+
Sbjct: 578 PLLRYRRSEELLLRWL-ELSAFTVVFRTHEGNKPGSNCQFYSNNRTLAHFARCAKIYK 634


>05_04_0002 + 17031662-17032264
          Length = 200

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 160 PTVEFVGPVKIVLVDPSKKENRRKSCGAAFIALANLMM 273
           PTV+ V P   V+ DPSK   R      A +   NL+M
Sbjct: 4   PTVQMVAPAAAVVEDPSKHWTRHGPVLTACLVGINLLM 41


>06_01_0137 - 1045301-1047601
          Length = 766

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 TADRRIRWASEDSSRRSF*KGKQEKIVWGC 245
           +A R ++W +   SRR++ + KQ  ++W C
Sbjct: 482 SAIRGVQWVTNRMSRRNYLRVKQYSVLWFC 511


>06_01_0124 - 958935-959967,959985-961222
          Length = 756

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 159 ADRRIRWASEDSSRRSF*KGKQEKIVWGC 245
           A R ++W +   SRR++ + KQ  ++W C
Sbjct: 473 AIRGVQWVTNRMSRRNYLRVKQYSVLWFC 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,240,784
Number of Sequences: 37544
Number of extensions: 361828
Number of successful extensions: 904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)