Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h24
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    28   5.2  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    28   5.2  
Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF016684-12|AAB66204.1|  291|Caenorhabditis elegans Hypothetical...    27   9.1  
AC006833-12|AAF60942.1|  218|Caenorhabditis elegans Enhancer of ...    27   9.1  
AC006833-11|AAU87801.1|  175|Caenorhabditis elegans Enhancer of ...    27   9.1  
AC006833-10|AAU87800.1|  262|Caenorhabditis elegans Enhancer of ...    27   9.1  

>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 629 PLPVQ*IIKPVKTASTAIPPEATPVME 549
           P P+Q I KP++     IPP   PV +
Sbjct: 709 PQPIQHIQKPIQPQQVRIPPSTAPVQK 735


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
           protein 25, isoforma protein.
          Length = 1237

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 629 PLPVQ*IIKPVKTASTAIPPEATPVME 549
           P P+Q I KP++     IPP   PV +
Sbjct: 816 PQPIQHIQKPIQPQQVRIPPSTAPVQK 842


>Z78418-4|CAB01698.1|  710|Caenorhabditis elegans Hypothetical
           protein F25D7.5 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 297 VLHARFQVKTICKFAHC-FVYNWVSAMFPFGDIIVEQPKRCQLRAEVKTKEVPAFVPAII 473
           +  A  ++   CKF  C F      + F FG++ + +  +   R   K  + P  +PA+I
Sbjct: 267 ISQATCRINYFCKFFSCDFRKKSKISFFFFGNVSILKNFQFFFRCSTKPNKKPQKIPAMI 326

Query: 474 RTWLWSG 494
           + W+  G
Sbjct: 327 Q-WMLEG 332


>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical
           protein C54G7.4 protein.
          Length = 1199

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 332 TNSFNLKPSV*YRMVMLEAPIIKLA--KAINAAPHDFLLFSFLEGSTRTIFT 183
           TNS+ + PS+    + L     +LA  K +   P  FLL+ F     + I+T
Sbjct: 549 TNSYPVSPSI--NSIKLNCTFTRLAVIKLVEQVPFQFLLYEFDGDELKLIYT 598


>AF016684-12|AAB66204.1|  291|Caenorhabditis elegans Hypothetical
           protein F45C12.4 protein.
          Length = 291

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 449 NFLCFNFSPELAPFRLFNNNI-AEGKHS*YPIVHKTMCKFTNSF 321
           ++ C  +  EL PFRL+ N   A  KH    +V K     + +F
Sbjct: 107 DWCCATYECELTPFRLYGNMFGASTKHDGVLVVEKKKLNVSKAF 150


>AC006833-12|AAF60942.1|  218|Caenorhabditis elegans Enhancer of
           hand mutation hnd-1protein 3, isoform b protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 237 WGCVYCFGQFDDGCF*HYHSVLHA 308
           W C YC  +FDD    + HS LH+
Sbjct: 164 WYCDYCKIRFDDKVMWYLHSGLHS 187


>AC006833-11|AAU87801.1|  175|Caenorhabditis elegans Enhancer of
           hand mutation hnd-1protein 3, isoform c protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 237 WGCVYCFGQFDDGCF*HYHSVLHA 308
           W C YC  +FDD    + HS LH+
Sbjct: 121 WYCDYCKIRFDDKVMWYLHSGLHS 144


>AC006833-10|AAU87800.1|  262|Caenorhabditis elegans Enhancer of
           hand mutation hnd-1protein 3, isoform a protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 237 WGCVYCFGQFDDGCF*HYHSVLHA 308
           W C YC  +FDD    + HS LH+
Sbjct: 208 WYCDYCKIRFDDKVMWYLHSGLHS 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,931
Number of Sequences: 27780
Number of extensions: 335497
Number of successful extensions: 860
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)