Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h22
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   0.93 
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   2.1  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    27   2.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   4.9  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.5  

>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 336 YVFIQNIDAESKFFIIEKIKRFLNLFCLL 250
           +V++QN+  E KFF++  + R  +  CL+
Sbjct: 498 WVYLQNVFREEKFFMVRIVFRACSTVCLI 526


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 83  FSSTSFSNKLQSLMILLLISFQC 15
           F STSFS  +  L + LL++F C
Sbjct: 262 FESTSFSTSILFLHVALLVAFTC 284


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 278 LIFSMMKNLLSASIF*IKT*HASETILLNLSKWPKSHGRIM*NFIS 415
           LI  + ++  S  I   KT    E +LLNL K P +HG ++ NF S
Sbjct: 191 LIHGLGRHYYSLRINYKKT-ELEEIMLLNLHKQPWAHGLLLENFNS 235


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 380 WAIWTSLVILSPTHATFLFKI 318
           W+ +T++VIL+  H T +F I
Sbjct: 120 WSFYTTIVILAVLHVTHVFPI 140


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 409 YQPYEVEQILLPDNASCLAVQAFLKMCNLPF 501
           Y  Y   QILL D    + + AFLK  + PF
Sbjct: 382 YDDYTTNQILLEDYMPGIPLSAFLKHKSGPF 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,400,672
Number of Sequences: 5004
Number of extensions: 48103
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)