Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte5h22
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0481 + 3427723-3427906,3428856-3429196,3429286-3429362,342... 31 0.72
03_02_0301 + 7252434-7252591,7253005-7253075,7253553-7253671,725... 29 2.2
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983... 29 2.9
11_04_0453 - 17886095-17886868,17887928-17888043,17888300-178884... 28 5.1
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 5.1
06_01_0758 + 5668750-5669080,5670545-5670738,5670858-5670891,567... 28 5.1
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 27 8.9
07_03_1789 - 29527145-29527204,29527277-29527358,29527457-295275... 27 8.9
>06_01_0481 +
3427723-3427906,3428856-3429196,3429286-3429362,
3429509-3429569,3429852-3430023,3430600-3430616
Length = 283
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/42 (30%), Positives = 27/42 (64%)
Frame = +1
Query: 454 SCLAVQAFLKMCNLPFEVEMRWNAEFMSPSGRVPFIKCGAFV 579
+CL V +L+MCN+PF++ + ++ F + +P+++ G V
Sbjct: 35 TCLPVLLYLRMCNVPFDIHV--DSSF-PDADHIPYVEFGECV 73
>03_02_0301 +
7252434-7252591,7253005-7253075,7253553-7253671,
7254106-7254225
Length = 155
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 107 KVLFSQNGNSNHPFRPRVLRLHPAELVKLYLII 205
KV+FS+N + PR+L LH + V+L I+
Sbjct: 22 KVIFSKNSHLQEVLAPRMLALHQIQEVRLKTIV 54
>03_02_0610 +
9834083-9834368,9834495-9834556,9834695-9834787,
9835689-9835805,9835972-9836055,9836198-9836293,
9836368-9836445,9836548-9836637,9836733-9836800,
9836940-9837021,9838203-9838289
Length = 380
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 310 GINILNKNVACVGDNITKLVQMAQEP 387
G+N+L +N+ DN+T+ + +A+EP
Sbjct: 237 GLNVLAENIQDDKDNVTRFMMLAREP 262
>11_04_0453 -
17886095-17886868,17887928-17888043,17888300-17888423,
17889734-17889963,17891395-17891452
Length = 433
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = -1
Query: 474 CLYCQTARIVR*QYLLNFIRLIKFHIIRPWLLGHL-DKFSNIVSDAC 337
CL +A +VR YL+ FI K + + W+L H+ D+ IV+ +C
Sbjct: 148 CLNLSSAPMVRSAYLIEFICQCK-KLQQLWVLDHIGDEGLKIVASSC 193
>10_08_0894 -
21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 352 NITKLVQMAQE--PWPDNVKLYQPYEVEQILLPDNAS-CLAVQAFLKMCNLPFEVEMRWN 522
NI LV E P + + + + + E +PD A+ CL + + + C PF +
Sbjct: 426 NIDVLVDSINEIAPRTNWITVVENLDHEGFCIPDEAAFCLLMSIYSRACKDPFPLHAVCG 485
Query: 523 AEFMSPSGRVPFIK 564
+ + + G++ F+K
Sbjct: 486 SLWKNTEGQLSFLK 499
>06_01_0758 +
5668750-5669080,5670545-5670738,5670858-5670891,
5670986-5671896
Length = 489
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +2
Query: 455 AVWQYKHF*RCVIFHSKWRCAGMLNSCLHRDASPSLSAVLLSYPNWSLSXSL 610
A + ++HF RCV F + +R M SP+ + + W L+ L
Sbjct: 385 AAFLFRHFGRCVYFDAAYRARAMAEEPNKNYFSPAFALAKHANAAWELARGL 436
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 512 CAGMLNSCLHRDASPSLSAVLLSYPNWS 595
CAG+ C H D SP LS ++++ WS
Sbjct: 179 CAGI--GCCHVDISPGLSDNVVTFGEWS 204
>07_03_1789 -
29527145-29527204,29527277-29527358,29527457-29527524,
29527633-29527722,29527811-29527888,29527969-29528064,
29528217-29528300,29528405-29528605,29528967-29529059,
29529573-29529639,29530843-29530901,29531036-29531202,
29531420-29531509,29531868-29531916,29532109-29532174,
29532260-29532434,29532528-29532649
Length = 548
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 310 GINILNKNVACVGDNITKLVQMAQEP 387
G++IL +N+ DN+T+ + +A+EP
Sbjct: 414 GLDILAENIQDDTDNVTRFMMLAREP 439
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,487
Number of Sequences: 37544
Number of extensions: 281108
Number of successful extensions: 727
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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