Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h22
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ298419-1|ABC33802.1|  230|Caenorhabditis elegans metaxin 2 pro...    70   2e-12
L14714-1|AAA28180.2|  244|Caenorhabditis elegans Temporarily ass...    69   2e-12
L14714-2|AAO12391.1|   55|Caenorhabditis elegans Temporarily ass...    50   1e-06
U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    28   4.6  
U58758-2|AAB93428.1|  424|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical p...    27   8.0  

>DQ298419-1|ABC33802.1|  230|Caenorhabditis elegans metaxin 2
           protein.
          Length = 230

 Score = 69.7 bits (163), Expect = 2e-12
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = +1

Query: 355 ITKLVQM-AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWNAEF 531
           +T  + M A + W D V L+ PY  +Q L+ D A CLAVQ FL+M +LPF V  R N +F
Sbjct: 11  VTDALSMNAAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQRPNVDF 69

Query: 532 MSPSGRVPFIKCGAFVVSELEPIXQF 609
           +SP G VP +K    +++    I  F
Sbjct: 70  ISPDGVVPLLKINKTLITGFNAIVDF 95


>L14714-1|AAA28180.2|  244|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 354, isoform a protein.
          Length = 244

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 34/78 (43%), Positives = 46/78 (58%)
 Frame = +1

Query: 376 AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWNAEFMSPSGRVP 555
           A + W D V L+ PY  +Q L+ D A CLAVQ FL+M +LPF V  R N +F+SP G VP
Sbjct: 3   AAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQRPNVDFISPDGVVP 61

Query: 556 FIKCGAFVVSELEPIXQF 609
            +K    +++    I  F
Sbjct: 62  LLKINKTLITGFNAIVDF 79


>L14714-2|AAO12391.1|   55|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 354, isoform b protein.
          Length = 55

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/49 (51%), Positives = 31/49 (63%)
 Frame = +1

Query: 376 AQEPWPDNVKLYQPYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWN 522
           A + W D V L+ PY  +Q L+ D A CLAVQ FL+M +LPF V  R N
Sbjct: 3   AAQDWED-VSLFTPYLNDQALMYDFADCLAVQTFLRMTSLPFNVRQRPN 50


>U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical
           protein C25H3.7b protein.
          Length = 275

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +1

Query: 388 WPDNVK-LYQ---PYEVEQILLPDNASCLAVQAFLKMCNLPFEVEMRWNAEFMSPSGRVP 555
           W +NV  LYQ   P   +  L P    CL ++ FL+   +  EV   W     SP G +P
Sbjct: 35  WKENVVYLYQFPRPANRQPNLSP---YCLKIETFLRANRIKHEVVGTWLTLRQSPRGLLP 91

Query: 556 FIKCGAFVVSELEPI 600
           FI+     +S+ + I
Sbjct: 92  FIELNGQQISDSQVI 106


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 547 VPMET*-IQHSSASPLRMEDYTSSEMLVLPDSSHCQV 440
           VP++T  I H + SPL +   +SS  +  P + HC+V
Sbjct: 13  VPLQTVMIGHPATSPLSLPSSSSSPTVADPSNIHCRV 49


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 547 VPMET*-IQHSSASPLRMEDYTSSEMLVLPDSSHCQV 440
           VP++T  I H + SPL +   +SS  +  P + HC+V
Sbjct: 23  VPLQTVMIGHPATSPLSLPSSSSSPTVADPSNIHCRV 59


>U58758-2|AAB93428.1|  424|Caenorhabditis elegans Hypothetical
           protein ZK1127.6 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 336 YVFIQNIDAESKFFIIEKIKRFLNLFCLL 250
           +VF Q +     FFI  ++K +L LF LL
Sbjct: 14  HVFAQMVHISCDFFITSELKSYLKLFILL 42


>Z77661-11|CAB01190.2| 1099|Caenorhabditis elegans Hypothetical
           protein F40G12.3 protein.
          Length = 1099

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = -1

Query: 381 LGHLDKFSNIVSDACYVFIQNIDAE------SKFFIIEKIKRFLNLFCLLSMV 241
           +G L    +++   CYVF+Q +D +      S + ++ K+ RF  LF LL ++
Sbjct: 51  IGTLPSKPHLLGVTCYVFLQKLDTKSVNFKLSNYSVMLKVARF--LFFLLQVI 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,217
Number of Sequences: 27780
Number of extensions: 261954
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)