Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h20
         (225 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0265 + 2808271-2809064,2809624-2809807                           29   0.67 
12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    26   3.6  
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    25   6.2  
01_06_0518 + 29988613-29989193,29989596-29989622,29989759-299898...    25   8.2  

>10_01_0265 + 2808271-2809064,2809624-2809807
          Length = 325

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -2

Query: 134 EISTIQNYNLPLLLTPHALTSG 69
           ++S +  YNLP+L+TP A TSG
Sbjct: 140 DVSLVDGYNLPMLVTPSA-TSG 160


>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 201 NKTSSL*EYV*FHLYNTKLFEKGNIYDTKLQPPIAIDAAR 82
           ++ + L + V FHL+ +K+F   N+      PP+  D  R
Sbjct: 249 HELNPLSDEVSFHLFLSKVFPNSNLNQAMSYPPLMEDLGR 288


>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 95  LTPHALTSGWPDVESR 48
           L   A+T+GWP+VE R
Sbjct: 152 LNSSAVTNGWPEVEKR 167


>01_06_0518 +
           29988613-29989193,29989596-29989622,29989759-29989891,
           29990006-29990240,29990524-29990566,29990672-29990952,
           29991293-29991423,29991812-29991946
          Length = 521

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 120 YRRYFLFRKALYYID 164
           Y R+ LF +ALYY+D
Sbjct: 469 YFRFVLFHRALYYMD 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,532,814
Number of Sequences: 37544
Number of extensions: 65955
Number of successful extensions: 198
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)