Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h20
         (225 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   3.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   4.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   5.7  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              19   7.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   9.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    19   9.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 2.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 131 FPFSKSFVLYRWN 169
           F ++K  V+Y+WN
Sbjct: 151 FGYTKRDVIYKWN 163


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 3.2
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 141 EKGNIYDTKLQPPIAIDAARAHVRL 67
           +KG+  D  + PP+  D A  + ++
Sbjct: 238 KKGSAIDLDIGPPLHADQAEEYKKI 262


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 4.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 164 WNQTYSYNEEVLLNYKIQ 217
           W   + YN E  LNY I+
Sbjct: 208 WYLNHDYNLENKLNYFIE 225


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 91  VNSNGRL*FCIVDISFFEKLCII 159
           V +NG +   + D S+F ++C++
Sbjct: 504 VMANGEVATSLSDGSYFGEICLL 526


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 5.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 91  VNSNGRL*FCIVDISFFEKLCII 159
           V +NG +   + D S+F ++C++
Sbjct: 472 VMANGEVATSLSDGSYFGEICLL 494


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 176 MSDSIYIIQSFSKKEISTIQ 117
           +   ++ +QS   KEI T Q
Sbjct: 22  LKSGLHTVQSVCMKEIGTAQ 41


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 19.0 bits (37), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 16  TFKNSH*KYLSRDSTSGQ 69
           +FK S  + +SR ST+GQ
Sbjct: 711 SFKVSKHEEVSRTSTAGQ 728



 Score = 18.6 bits (36), Expect = 9.9
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = -2

Query: 134  EISTIQNYNLPLLL 93
            +++ ++N+N PLL+
Sbjct: 1027 DMNALKNFNQPLLV 1040


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 115 FCIVDISFFEKLCI 156
           FC++ + FFE + I
Sbjct: 453 FCLLFLMFFECIAI 466


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 115 FCIVDISFFEKLCI 156
           FC++ + FFE + I
Sbjct: 506 FCLLFLMFFECIAI 519


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 18.6 bits (36), Expect = 9.9
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -2

Query: 86  HALTSGWPDVESRERYF*CEFLNVL 12
           H   +G PD+  R      E  NVL
Sbjct: 185 HQFATGQPDLNYRSAALDQEMKNVL 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,737
Number of Sequences: 438
Number of extensions: 937
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3533460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)