Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte5h18
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    71   2e-13
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    31   0.14 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.3  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   1.8  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    26   4.0  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   4.0  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    26   4.0  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    26   5.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   7.1  
SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5 |Schiz...    25   7.1  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.1  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   7.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   9.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 17/196 (8%)
 Frame = +3

Query: 108 GTLVGSKTKTYSGYEY-YEFLQIPYAKAPIGEFRFKSPQPPES-WEHERDATSVNPNNVC 281
           G L G      +G E  + F  I YAK P+G+ R++ P   E  +++  D        +C
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFK--TIC 59

Query: 282 FQ--FDIFLNASRG-----SEDCLYLNVFTPKLPSCDKLLPTMVSIHGGGFVLGNGIIKT 440
            Q  ++   N  R       EDCL+LN++ P      +  P +  IHGG   +GN +   
Sbjct: 60  PQPFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYR 119

Query: 441 ENGPDFLIEHDVVVVFI----NYRLGAFGFLS----LDIPEAAGNMGLKDQVMALKWVQE 596
           +  P  L        FI     +RL  FGFL+    L+    + N G  DQ + L+W  +
Sbjct: 120 QCDPQDLQADGSPAKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYK 179

Query: 597 NIQQFCGNKDSVTIFG 644
           +I+ F GNK+++ + G
Sbjct: 180 HIESFGGNKENIAVGG 195


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +3

Query: 342 VFTPKLPSCDKLLPTMVSIHGGGFVLGNGIIKTEN--GPDFLIEHDVVVVFINYRL 503
           +F P   + +   P  +  HGGG+VLGN  I TEN        +   VVV ++YRL
Sbjct: 88  IFRPHGTAPEGGWPCFLWFHGGGWVLGN--INTENSFATHMCEQAKCVVVNVDYRL 141


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/41 (26%), Positives = 25/41 (60%)
 Frame = +3

Query: 522 SLDIPEAAGNMGLKDQVMALKWVQENIQQFCGNKDSVTIFG 644
           S+ IPE+   + L+++ ++   ++ N  +    +DS++IFG
Sbjct: 162 SITIPESDQQINLQNKFLSTPSIKNNANKSLSPQDSISIFG 202


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 411  FVLGNGIIKTENGPDFLIEHDVVVVFINY 497
            + +GN I KT+ G  FLI HD + + + Y
Sbjct: 1102 WAIGN-IGKTDQGITFLINHDTIPLIVKY 1129


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/71 (26%), Positives = 31/71 (43%)
 Frame = +3

Query: 6   VLPPLSDKAMLFAIIICVQVLSVFGESPRVTVKHGTLVGSKTKTYSGYEYYEFLQIPYAK 185
           VL PL+DK ++  + IC+ V     E+  +T+    ++G      S   Y  +  +P  K
Sbjct: 458 VLDPLADKTLMTCLTICLAV----RETMPLTLA-SLIIGRDVLLVSAVSYLRYKSLPAPK 512

Query: 186 APIGEFRFKSP 218
                F F  P
Sbjct: 513 TFRRFFDFAIP 523


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 488 KYNDNIMFNKKVWSVFCLNYPISQDKTSSVYGHH 387
           KYN  I   +K+ +   LN  + + + SS Y HH
Sbjct: 425 KYNGLIQALQKLQTCMRLNDALIEQRLSSTYAHH 458


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 531 IPEAAGNMGLKDQVMALKWVQENIQQFCG 617
           +P   G+ G++  + A KW +EN   + G
Sbjct: 373 VPGGFGSRGVEGMIAAAKWARENNTPYLG 401


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 290 ELKTNIIRIY*SSISFVFPRLWWLWTLEPK 201
           +++ N    Y ++I+  +P + WLW L+ K
Sbjct: 323 KIRFNCDETYAATITSKYPNVLWLWNLQNK 352


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 336 DTDNLHYLLKR*GKYRIENKHYSDLLK 256
           D  N H LL + G  +IEN+ YSD +K
Sbjct: 460 DPRNYHALLGK-GLVQIENEQYSDAVK 485


>SPBC4B4.10c |mug77|atg5|autophagy associated protein Atg5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +3

Query: 303 NASRGSEDCLYLNVFTPKL-PSCDKLLPTMVSIHG 404
           +A  GS    +LN   P L PSCDK L     IHG
Sbjct: 197 SAPLGSSLGEFLNKRLPDLFPSCDKFLIVKPVIHG 231


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +1

Query: 4   LCCRLYRTRQCYLRLLYVCKCSL 72
           LC +LY  R  ++R+ Y+ +C+L
Sbjct: 248 LCYQLYYPRTAHVRIHYLIECAL 270


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 144 GYEYYEFLQIPYAKAPIGEFRFKSPQPPESWEHERD 251
           G +Y  F  IP+   P   F    P  P++ +HE D
Sbjct: 621 GIQYQPF--IPFTAVPSFPFNCNVPNYPQTSDHEND 654


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +1

Query: 268 RIMFVFNSI-FSSTLQEVVKIVCISM-FLHQNCHLVINFFQPWCPYTEEV---LSWE 423
           R + +F+ I F  ++  V +IV   + FL Q      N FQ  CPYT  V   + WE
Sbjct: 566 RYIHIFHHIQFMLSIPCVAEIVREDLKFLKQYADF-FNLFQGMCPYTRAVSQHVEWE 621


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 485 YN-DNIMFNKKVWSVFCLNYPISQDKTSSVYGHHGWKKFI 369
           YN D ++F + + SV      +   K S V+G   WKK +
Sbjct: 197 YNEDEVLFARTMHSVMKNISHLCTRKNSQVWGKDAWKKVV 236


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 259 EVASLSCSQDSGGCGLLNLNSPMGAFAYGICK 164
           E      +QDS  C   N+ S     AYG+ K
Sbjct: 897 ETKKKELTQDSSFCKFQNIRSNFSQIAYGVSK 928


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 21/56 (37%), Positives = 24/56 (42%)
 Frame = -1

Query: 571 T*SFSPMLPAASGISKDKNPKAPSL*FINTTTTSCSIRKSGPFSVLIIPFPKTKPP 404
           T S S  +P  S  S D N   P      + TTS SI  +G  S L  P   T PP
Sbjct: 143 TSSTSIPIPPTSTSSTDTNSN-PLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,814
Number of Sequences: 5004
Number of extensions: 69673
Number of successful extensions: 216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)